BAC Information

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BAC

Clone NameMSMg01-399P24
Chromosome1 (Build37)
Map Location 31,102,851 - 31,103,119
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616
Downstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399P24.T7 (MSMg01no399_p24.b1)MSMg01-399P24.TJ (MSMg01no399_p24.g1)
ACCAG499726AG499727
length781755
length of high quality
(start - end)
276 (49 - 324)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no399_p24.b1 PHD_FILE: MSMg01no399_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:09 2005CHROMAT_FILE: MSMg01no399_p24.g1 PHD_FILE: MSMg01no399_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGATACTTGCCCGGCCAGTGTTATGAATGGCAGAAATGGGCA
TTCCCTCATGGAGTTCTCTGGCCCAGGTATACCAGGGTTCTGTGGTGTCT
TGGCTGGGTGTCCTGCAGGAACAGTGGCAGAAGATTGTCTTTGCAGGATG
CTTTTGAGTCTACTCCCGCACTTACTTCCCTTGCTCTTCTTCCTTCAAGC
TAGATTTTCTTGTATTCCAAAGAAACTTCTAAAGTGGAACATAAGAACTG
GTGCCTTGGTCTCTGCTTTGAATTATTATGTCACCACTCTGAGAAGTTCA
TGGAAACATTTTTGGGTAAATACAACTCCTGCGTCAAATACACTCACTGT
GCCCAAGCCATGCTGTATATCCCCCCCCTGTTTTCATCTAGTTATCTGAC
TGCCTTGTTTTATTTGAGTACAATCCCTGACTCCAGGCTTATCCTGATTA
TTTATGACGACTCTTCATTATATCACTTCTCTGAAAATTCCTTTTAACTC
TGTTTCTCATCTAGGCTATCTCCTACTGATAGAACATACTCCTGATTATC
ATCTTGCTCTTACATAAATTGCTTTATCTATCCTAAGCTGCTCCTATACT
AATCCTTTTCTTCTCTGCCCCCCACTCCCATTTTCTTCCCTTATTCTTAT
TGCCTACTTTCCCTTTTCCTTCCATACCCTTTTTCCCTCCCGTCTTTTTT
TTTTCCTATTTTCCCCTTATGTCCTGGTTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACCAGGAATCCCACAGCTACC
ACACTCTCCTGAGAACTAGCAAGGGCAACAGAAACCAAGAGACAAAACAT
CCATACATCCAACAACCAGAAGACTAGATATCAGCACCTAGAATTACAAT
CATCCCAAACCCAGATCTCTAGATGCCAGAACAATATTCCAATAATATCC
AGGACTATATGTCTCCACTAAAGTCAAAAAACACTTCTCTAGTGGGACCT
AAGAAATGCAATATAGCTGAATCTCATAGAAGAACTTCAAAAAAGGTCCT
TAAAGATGAAATGAACAAATCTGCTATAGAAATCTATATAAACATAGCAG
AATGAAAGGAAGAAAGCATACCAATAGAAATAGAATCAATTTTTTTTTAA
AGCTGAACTTAGGGAAGACTGGTAAGGAAACATTTAGGAACTCAAACAGG
AAACTCAGAAGCAAGCATCACCAACAGAATATAAAAGCTGGAAGAGAAAA
TCTCAGTCTCTATTGGAGATGTGATAGAAGAAATGAATGCTTATCAAATA
AGATGTTAAGTCTAAAAAAACCTCAGGCAGAGAGCATCTAGGAAATGTGG
GACACTGTGACAAAACTAAATCCAAGAGTAATAGGAACAGATTAAGGAGT
AAATACCCCGGACAAAGGTATAGAAAATACTTTCACCCCAATCATCACAG
ACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_p24.b1 MSMg01no399_p24.b1 CHROMAT_FILE:
MSMg01no399_p24.b1 PHD_FILE: MSMg01no399_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:09 2005
         (276 letters)



>mm_chr1_31102647_31103321
          Length = 675

 Score =  476 bits (246), Expect = e-139
 Identities = 264/270 (97%), Gaps = 1/270 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatacttgcccggccagtgttatgaatggcagaaatgggcattccctcatgga 64
           |||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatacttgttgggc-agtgttatgaatggcagaaatgggcattccctcatgga 263

                                                                       
Query: 65  gttctctggcccaggtataccagggttctgtggtgtcttggctgggtgtcctgcaggaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttctctggcccaggtataccagggttctgtggtgtcttggctgggtgtcctgcaggaac 323

                                                                       
Query: 125 agtggcagaagattgtctttgcaggatgcttttgagtctactcccgcacttacttccctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtggcagaagattgtctttgcaggatgcttttgagtctactcccgcacttacttccctt 383

                                                                       
Query: 185 gctcttcttccttcaagctagattttcttgtattccaaagaaacttctaaagtggaacat 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 gctcttcttccttcaagctagattctcttgtattccaaagaaacttctaaagtggaacat 443

                                         
Query: 245 aagaactggtgccttggtctctgctttgaa 274
           ||||||||||||||||| ||||||||||||
Sbjct: 444 aagaactggtgccttgggctctgctttgaa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space:   177822
Effective search space used:   177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)