BAC Information

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BAC

Clone NameMSMg01-400I14
Chromosome1 (Build37)
Map Location 96,610,396 - 96,610,730
singlet/doubletsinglet
Overlap genenone
Upstream geneThap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400I14.T7 (MSMg01no400_i14.b1)MSMg01-400I14.TJ (MSMg01no400_i14.g1)
ACCAG500136AG500137
length835806
length of high quality
(start - end)
---426 (75 - 500)
definitionCHROMAT_FILE: MSMg01no400_i14.b1 PHD_FILE: MSMg01no400_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:53 2005CHROMAT_FILE: MSMg01no400_i14.g1 PHD_FILE: MSMg01no400_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAGAG
ATCCGCGGAAAATTCTCCACCTGTATGCAAAACCCGAAAAGGGCCTGGAA
GAAAAGCACCCTAAAAAAAAAAGGGTTCCCAAAAAACCCCCTTAAAAACC
CCCCCCGGGGGAAAAAAGGGGCCAAAAACCCAAAAAAAAAAACCCCCCCG
GGGAAAAAAAAATACCCCCCCCCACCCTCTCTTCCACCCCGCTCCCCCCC
CCAAAGAGAGGGGGGGAGACCGCCACGAAACCACAAAAACGATAGAGGGA
AGNTCTAGGGGGGGGAGAAAAAAAAAAAAAAAAAACCCCCGCGGGAGACA
AAAAAAGAAGGGGGGGGGAGGGGGGGGGAAAAAAAAAAAAAAAACCCCCC
CCCCCCCCCCCCCCCGGGGGGGAGAAAGAAAAATTTTTTTCCCCCTCCCC
CCCCCCCCCCCCCCCCAGAAAGCCCGGGGGGGGGGGGCCCCCCACACCCC
CCAAAAAAGAGAGAGGGAAGGAAAACCGGGAGGGAGGTTTTTTTTTTTTT
TTGNCCCCCCCCCCCCCCCCCGCGCCGGGGGGGGGGGGGCGGACGAAAAA
CAAAAAACAACCACCCCCCCCCCCACTACACAAAATACAGAGGCGCCGCC
CCTACTCCCTCCACCTACCCCTACCCCCCCTCCCCCAAATCTCCCCCCCC
CAACCACCAACACCGAGGCACACCAGCGCGCACACCCCCAGCNNNNTNCT
CCCCCCCCCGCCACCCCCACGAAAAGNTTTAAGAGAGCGAATCAGAGAGG
AGCGCAACGCTCCCCGGGCTCCCCACCCAACCCCA
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTTCCAGTCTTTGCTATTC
TTGTGTACTGCTCAGGGTATTTGTACTCATGTGGTTTTCTAGATTCCCAG
AAATGTATTAGAGGTTTTCCATGTCCCTGTGGACATTTTGTTCCTTTTAG
GCATGGTTAATAATTCATTTGCCCGGTTATTTTTTTATCCACTGCTCTGG
GGAGTGATGAAGTAAACAACTCATTTAACAATGTATTTGACTTCAATAAA
TGTCTATTGGGAACAAAGCTTTTTTCTCTGTGTAAGAGCTAAACCAGGTT
AATGCAGAAAGCCTTGCAGGTGCAGGTAAAAGAGTTTCCACTGCTCTGAC
AAAACTTCCCGAAACCCAAATCAAAGGAACTTTATTTGGGATGCTGGGTA
GAAATGTTTCAGCCTGTGCCAAGCTGATATTTTTATCTTTTGCCTGGATG
AGGCAGATCACAGTGCACGGGTGTAGAATACAGTTGCTCAGCACCTGGCC
TTCCAGAACCAGATAAAATTGATTTACAGGACTTCAACGAGGACATAACC
CTTCCAAGACATTGCATGGTGCCCGGGACCATTTTCATCTCCTACCACCC
CCTCATCTTATAGTTGGTTCTATTCCTCTTGAGCGGTCAACCCTCCCCTC
TAAAAAATATGCGTTTTTTGTTTTCCCTTTGTCGGGAAACCTTTTATTTT
CATACCATATAGGCCAATATTTTCCTTCTTTTATTTTTCTTCTTTTTTTG
TAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_i14.g1 MSMg01no400_i14.g1 CHROMAT_FILE:
MSMg01no400_i14.g1 PHD_FILE: MSMg01no400_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:53 2005
         (426 letters)



>mm_chr1_96609905_96610730
          Length = 826

 Score =  605 bits (313), Expect = e-177
 Identities = 330/337 (97%), Gaps = 4/337 (1%)
 Strand = Plus / Minus

                                                                       
Query: 92  tttccatgtccctgtggacattttgttccttttaggcatggttaataattcatttgcccg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tttccatgtccctgtggacattttgttccttttaggcatggttaataattcatttgcccg 767

                                                                       
Query: 152 gttatttttttatccactgctctggggagtgatgaagtaaacaactcatttaacaatgta 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gttatttttttatccactgctctggggagtgatgaagtaaacaactcatttaacaatgta 707

                                                                       
Query: 212 tttgacttcaataaatgtctattgggaacaaagcttttttc--tctgtgtaagagctaaa 269
           ||||||||||||||||||||||||||||||||||  |||||   ||||||||||||||||
Sbjct: 706 tttgacttcaataaatgtctattgggaacaaagc--ttttccagctgtgtaagagctaaa 649

                                                                       
Query: 270 ccaggttaatgcagaaagccttgcaggtgcaggtaaaagagtttccactgctctgacaaa 329
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tcaggttaatgcagacagccttgcaggtgcaggtaaaagagtttccactgctctgacaaa 589

                                                                       
Query: 330 acttcccgaaacccaaatcaaaggaactttatttgggatgctgggtagaaatgtttcagc 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acttcccgaaacccaaatcaaaggaactttatttgggatgctgggtagaaatgtttcagc 529

                                                
Query: 390 ctgtgccaagctgatatttttatcttttgcctggatg 426
           |||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctgtgccaagctgatatttttatcttttgcctggatg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)