Query= MSMg01no400_p06.b1 MSMg01no400_p06.b1 CHROMAT_FILE:
MSMg01no400_p06.b1 PHD_FILE: MSMg01no400_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:26 2005
(503 letters)
>mm_chr1_83592596_83593498
Length = 903
Score = 513 bits (265), Expect = e-149
Identities = 314/331 (94%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 6 gaattctgtgactcgtactcttttccatcttaactgttacgtgagtggtttaccaaggtt 65
||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 329 gaattctatgactcaaaatcttttccatcttaactgttacttgagtggtttaccaaggtt 270
Query: 66 caacttcacaaggatgcaaacataaacctgtcctcatccctgaatggttcaggctttgct 125
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 269 caacttcacaaggatacaaacataaacttgtcctcatccctgaatggtttaggctttgct 210
Query: 126 ttttttttttctttttttaaaatttaattttatttttaatttatttttttacactccata 185
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttttttttttc--tttttaaaatttaattttatttttaatttatttttttacactccata 152
Query: 186 taccattccccgccaacccctatcccccttccctctgctccatatcccacaactcctccc 245
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 151 taccattccccgcctgcccctatcccccctccctctgctccatatcccacaactcctccc 92
Query: 246 caccccacctgacctctaaactccctggggcctccagtctcttgagggttaggtgtatca 305
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 91 caccccacctgacctctaaactccctggggtctccagtctcttgagggttaggtgcatca 32
Query: 306 tctctgaatgaacacagacgcagcagtactc 336
||| |||||||||||||| ||||||||||||
Sbjct: 31 tctgtgaatgaacacagatgcagcagtactc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_p06.g1 MSMg01no400_p06.g1 CHROMAT_FILE:
MSMg01no400_p06.g1 PHD_FILE: MSMg01no400_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:26 2005
(536 letters)
>mm_chr1_83424220_83425155
Length = 936
Score = 984 bits (509), Expect = 0.0
Identities = 530/537 (98%), Gaps = 2/537 (0%)
Strand = Plus / Plus
Query: 1 cattagaactcatggacatttttatgctctatccagatttgaaaaagaacaaataaaatt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattagaactcatggacattttcatgctctatccagatttgaaaaagaacaaataaaatt 260
Query: 61 cagaatcaatcattactcattgcaaggcatagaaaggagattgccatctgtccattgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaatcaatcattactcattgcaaggcatagaaaggagattgccatctgtccattgcct 320
Query: 121 ttgtacatggactctgaatataggtcttccaggtgttctctcaaaatgtagttgtagcaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttgtacatggactctgaatataggtcttccaggagttctctcaaaatgtagttgtagcaa 380
Query: 181 ctctgaggttggagaagtgcagttaaatacatgaatcactaagaagtggacttcgtctgt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctctgaggttggagaagtgcagttaaatacatgaatcactaagaagtgaacttcgtctgt 440
Query: 241 gctattcaagacatacagttttgagttattgacacaaggtaccaaagcagctcttgagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctattcaagacatacagttttgagttattgacacaaggtaccaaagcagctcttgagtc 500
Query: 301 ttcctatctcttttggtaaataaagagttgcctcttactgttttcctataatctgctgct 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ttcctatctcttttggtaaataaagagttgactcttactgttttcctataatctgctgct 560
Query: 361 gaacatcaggaatttagaatatttggaatttccaacagaccaatctagaaatttgtttgc 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gaacatcaggaatttagaatatttggaatttccaatagaccaatctagaaatttgtttgc 620
Query: 421 ttagctcatactaatgcaatttaagataaaaatttgtatgactcaatgatgcaaacaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagctcatactaatgcaatttaagataaaaatttgtatgactcaatgatgcaaacaggt 680
Query: 481 agcttaaatagttgataccagaacaa-tataattatttctggattcttgatttaaaa 536
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 681 agcttaaatagttgataccaga-caaatataattatttctggattcttgatttaaaa 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
