BAC Information

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BAC

Clone NameMSMg01-400P07
Chromosome1 (Build37)
Map Location 75,838,354 - 75,838,796
singlet/doubletsinglet
Overlap genenone
Upstream geneWnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400P07.T7 (MSMg01no400_p07.b1)MSMg01-400P07.TJ (MSMg01no400_p07.g1)
ACCAG500455AG500456
length788805
length of high quality
(start - end)
249 (72 - 320)443 (67 - 509)
definitionCHROMAT_FILE: MSMg01no400_p07.b1 PHD_FILE: MSMg01no400_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:26 2005CHROMAT_FILE: MSMg01no400_p07.g1 PHD_FILE: MSMg01no400_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAACAATGCGCGGAA
TTCATGAAAATTTCAGACAAATGGAAGGACCTAGAAAATATCATCCTGAG
TGAGGTAACTCAGTCACACACACACACACACACACACACACACACACACA
CACACACACACTAACACATATGGTATGCACTCACTGATAAGTGGATATTA
GTCCAAAAGCTTGGAATACCCAAGATGCAATTCACAGACCACATGAAGCT
CAATAATTAGAAAGACCAAAGTATGGATGCTTCAGTCCTTCTTAGAAAGG
AGAACAAAATACACACAGGATACTATATGGGACAAAGTGCAGAGTAGAGA
TTGAAGGAAAGGTCATCCACAAACTGTCCCCACCTGGGGATTTATCCCAG
ATACAGTTACCAAACTCTGACACTATTGTGAATGCTAAGAAATGCTAGCT
GATAGGAGCCTGACATAGCTGTCTCCTGAGAAGCTCTGCCAGAGACTGAC
AAATATAGAGGCAGATGCTCGAAGCCAACCATTGCACTGAGCATGGGGCC
CCCAATGGAGGAGTTAAAGAAAGGACTGAAGGAGATAAAGGGATTTGCAA
CCACATAGGGAATAATAACTATATCATCTCAACATGACCCCGCCCCCAGA
TATCCCAAAGACTAACTCCTCTATCTATAAGAGCATTCATGGCTCTCAAT
TGCTTATGTTATTAAATGCATGTCCTTATCCAGCTCCCATTGTTTTGAAT
ATGTTCTTTGGTTTTTATAACAACCCCTAAATATGTTT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAAATTCTTTCGGCTACTGATCCAGAAAATTGGAAAC
AACTTTGGCTCCCTGTTCAATCAGTTGTATAATCAGTGCACGTTGAGCTT
GCCCCCAAATTGTGGCCACCAGGCTGCTTGAAAGCCAGTGGGGAATCCAT
TATATGCGGGCTTTTGGAGGCTCTGGAGCTGGGGGCGGGGGGGGGGGGAA
GCAAACAGGGAAGCTGATTATTAGAGTCGAGGTGCTCAGAGGCTGGGGTG
TTAGGGACTTGGAAACGTTTTTTTTAGCTCTTGTTCTCCAGTGAGACAGT
AGGAAACCGACTAGAAACTATTTTAAATGAGTATGTCTAGAGATCCTACC
CAGAGTGGAGAGCGCCCCAGCCTGGAATGGTTGTGACTCGTAGGAGAGAC
ACAAAGGTTACTGGTGGGGAGGCGGTTGTCTAGATGATAGATAAACACCT
GAAAGTTGGGTTCAAAATGAGAACCTATTATGGAGATGTGGTTTGAGATC
CAGGTAAATACAGTTTTTGCCTACAGATTGCCTCTGTAATTTATCCCAAA
ATCTTTAATCTCTGACCTTCCATTCTGTTTATTTATATCTTCACCTCCCC
TAACCAGCCAACATTTTTTTCTTTTTTATATCTACCACAATCTCTCCATA
TATTCATCCAAGTCTAGCCATTTGTTACAATCTCTAATATCACTTATTGC
ATCTTATTCTTTGAACTATCTTATATCATAAATTTCATATTATTCTTTTC
TTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_p07.g1 MSMg01no400_p07.g1 CHROMAT_FILE:
MSMg01no400_p07.g1 PHD_FILE: MSMg01no400_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:26 2005
         (443 letters)



>mm_chr1_75838154_75838996
          Length = 843

 Score =  712 bits (368), Expect = 0.0
 Identities = 423/452 (93%), Gaps = 18/452 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttcggctactgatccagaaaattggaaacaactttggctccctgttcaatcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttcggctactgatccagaaaattggaaacaactttggctccctgttcaatcagtt 260

                                                                       
Query: 61  gtataatcagtgcacgttgagcttgcccccaaattgtggccaccaggctgcttgaaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataatcagtgcacgttgagcttgcccccaaattgtggccaccaggctgcttgaaagcc 320

                                                                       
Query: 121 agtggggaatccattatatgcgggcttttggaggctctggagctgggggcgggggggggg 180
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 321 agtggggaatccgttatatgcgggcttttggaggctctgaagctgggggcgggggagggg 380

                                                                       
Query: 181 ggaagcaaacagggaagctgattattagagtcgaggtgctcagaggctggggtgttaggg 240
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gtaagcaaacagggaagctgattattagagtcgaggtgctcagaggctggagtgttaggg 440

                                                                       
Query: 241 acttggaaacgtttttttt---------agctcttgttctccagtgagacagtaggaaac 291
           |||||||||         |         ||||||||||||||||||||||||||||||||
Sbjct: 441 acttggaaa---------tggaaggggcagctcttgttctccagtgagacagtaggaaac 491

                                                                       
Query: 292 cgactagaaactattttaaatgagtatgtctagagatcctacccagagtggagagcgccc 351
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |
Sbjct: 492 cgagtagaaactattttaaatgagtatgtctagagctcctacccagagtggagagtggtc 551

                                                                       
Query: 352 cagcctggaatggttgtgactcgtaggagagacacaaaggttactggtggggaggcggtt 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 552 cagcctggaatggttgtgactcgtaggagagacacaaaggttactggtggggaggcgggt 611

                                           
Query: 412 gtctagatgatagataaacacctgaaagttgg 443
           ||||||||||||||||||||||||||||||||
Sbjct: 612 gtctagatgatagataaacacctgaaagttgg 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)