BAC Information

Click to search

BAC

Clone NameMSMg01-401D02
Chromosome1 (Build37)
Map Location 146,461,951 - 146,462,280
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21
Downstream geneRgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401D02.T7 (MSMg01no401_d02.b1)MSMg01-401D02.TJ (MSMg01no401_d02.g1)
ACCAG500636AG500637
length743748
length of high quality
(start - end)
644 (51 - 694)357 (81 - 437)
definitionCHROMAT_FILE: MSMg01no401_d02.b1 PHD_FILE: MSMg01no401_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:45 2005CHROMAT_FILE: MSMg01no401_d02.g1 PHD_FILE: MSMg01no401_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTTTTTCCTAGTTGAGTAATTTTAATTTTTTAAATGT
ACCTTATTTTCTGTATCCATTCCTCTGTTGAGGGTTACCTAGGTTTTTTC
CAGATTCTGGCAATTATAAAAGGCTGCTATGAACATAGTAGAGCATGTGT
CCTTATTACATGTTGGATATATGCTCAGGAGTGGGATAGCTGGGTCCTCT
GGTAGTACTATGTCCAATTTTCTGAGTAACTGGCAAACTGATTTTCCATA
GTGGCTGTACCAGAGCCTGATATTGCTGTCTCCTGAGAAGTTCTGCCAGT
GCATGACAAATACAGAGGTGGATGCTCTCAGCTAACCATTGTACTGAGCA
CAGGGTCCCCAATGAGTAAGCAAGAGAAAGGACTGAAGGAGCTGAAGGAG
CTTGTAGCCCCATAGGATGAACAACAATATGAACCAAGTAATAACCCCCA
GAGCTCCCAGGGCCTAAACTACCAATGAAAGAGTGCACATGGAGGGATCC
ATGGCTCCAGCTGCATTGGAGAAATCTTCTTGGTTAGGGATGGGGACATG
TGCCTACTGCTTATTTTAGCTCTGGATCCCCATCTAAGGAGGAGCCATAC
AGGCCCTTTGCATGCTGCCTCTGTCGGGTCCTATATTCAACAATTCTGTT
CATTTAGAGGGCCTTGCTTCCTTGATGTCCTCCATCCCCTCTT
TTCCCCGATTGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGTGGGACAGTTTCTGG
GTGGCCTTTCCTTCAGTATCTGCTCTACACATTTAAAATTTCACTCTTTG
AGTTCTACTAGTCAACTCTCTCTTGACTGTTCCAGGATCAAAATTTTCCT
ACATTCATATAGACAGACACTGAGTAGATGGCACTCTCTTTCTTGAATGC
TCTTGTTCTCCATATTCCCGAACAACTCCACATCATCTTTTTGATCTAGA
GATGTTTTCCATTACCTCAATGCTATTGTCATTTCTCTTTATTTTTAGCC
ATTCTGTTGCCAGTACCATTTACATACCCATTCTAAATATATGTAGTTGG
GCAGTTGTTGCTTTTAGTACTGAAATGTTTCATTAAAAGACATACGAAGA
TGGTAGTGATTGCTGTTGTTTCAATATGTTCTTAATTTCTGATCCCAGAC
ATGTGTCGAACAAAAATGTATTAAATAAATGAATCTTTATTAAAAATTTG
GAAAAGCCGCTTAAGGCTACTAAAAAAAAAAAGGATTTTTCGGGGAACTT
TAAAAGGCATGGGCCTTGCCAGGGGTTTTTTTGCCCAACCTTGGTACACC
CCTAAATAAATAACAACCTTTTGGTTCTTCTTTTCTTCTCCACACAAATT
TTCCCCTTTTAATAAGAAATTTTTGAGAGGCTTTTCACAAAAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_d02.g1 MSMg01no401_d02.g1 CHROMAT_FILE:
MSMg01no401_d02.g1 PHD_FILE: MSMg01no401_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:45 2005
         (357 letters)



>mm_chr1_146461721_146462477
          Length = 757

 Score =  561 bits (290), Expect = e-164
 Identities = 319/330 (96%), Gaps = 3/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 31  cttcagtatctgctctacacatttaaaatttcactctttgagttctactagtcaactctc 90
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cttcagtaactgctctacacatttaaaatttcactctttgagttctactagtcaactctc 290

                                                                       
Query: 91  tcttgactgttccaggatcaaaattttcctacattcatatagacagacactgagtagatg 150
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcttgactgttccaggatcaaatttttcctacattcatatagacagacactgagtagatg 350

                                                                       
Query: 151 gcactctctttcttgaatgctcttgttctccatattcccgaacaactccacatcatcttt 210
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 351 gcactctctttcttgaatgcccttattctccatattcccgaacaactccacatcatcttt 410

                                                                       
Query: 211 ttgatctagagatgttttccattacctcaatgctattgtcatttctctttatttttagcc 270
           ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 411 ttgatcttgagatgttttccattacctcaatgctagggtcatttctctttatttttagcc 470

                                                                       
Query: 271 attctgttgccagtaccatttacatacccattctaaatatatgtagttgggcagttgttg 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 attctgttgccagtaccatttacatacccattctaaatatatgtagttgggcagttgttg 530

                                         
Query: 331 cttttagtactgaaatgtt---tcattaaa 357
            ||||||||||||||||||   ||||||||
Sbjct: 531 gttttagtactgaaatgttgtttcattaaa 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)