Query= MSMg01no401_d13.b1 MSMg01no401_d13.b1 CHROMAT_FILE:
MSMg01no401_d13.b1 PHD_FILE: MSMg01no401_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:47 2005
(584 letters)
>mm_chr1_47226936_47227919
Length = 984
Score = 1079 bits (558), Expect = 0.0
Identities = 578/586 (98%), Gaps = 4/586 (0%)
Strand = Plus / Minus
Query: 1 ccttgaatttgcatcaatcctcctacatcagcctccagagtattggaattataaatatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccttgaatttgcatcaatcctcctacatcagcctccagagtattggaattataaatatgg 614
Query: 61 accattcagcttagtattaaaatatgaatttccaatgtaaaagaatgtatgtagaatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 accattcagcttagtattaaaatatgaatttccaatgtaaaagaatgtatgtagaatttt 554
Query: 121 taactcatgtcacttatgtaaatctagattgcatcaaggcaactgacaaatgtggaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taactcatgtcacttatgtaaatctagattgcatcaaggcaactgacaaatgtggaacaa 494
Query: 181 ttattttaaattaaaaagataatgtttcacaatccatgtgcttattcaatagtaatatga 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttattttaaactaaaaagataatgtttcacaatccatgtgcttattcaatagtaatatga 434
Query: 241 taagctctc--tcngtgtgcaaaccatagctgaaggatttcaggtgtactctgaaaaata 298
||||||| | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taagctcccatt--gtatgcaaaccatagctgaaggatttcaggtgtactctgaaaaata 376
Query: 299 agatgtggttttattcatgagaggtttatattccccttcagaatttatagcaccacttta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agatgtggttttattcatgagaggtttatattccccttcagaatttatagcaccacttta 316
Query: 359 aatcagccagagccttgttaggacataaatttctttagtagtcatcagaataaatgagtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aatcagccagagccttgttaggacataaatttctttagtagtcatcagaataaatgagtt 256
Query: 419 ctattgaactccacatatgaagagtaatccgtctgaagttgaaatttagaacatggtcct 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 ctattgaactccacatatgaagagtaatctgtctgaagttgaaatttagaacatggtcct 196
Query: 479 gtttacaatagcatcaaacaaaatcaaagaaataaatttaagaagtacaatatttgtacc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtttacaatagcatcaaacaaaatcaaagaaataaatttaagaagtacaatatttgtacc 136
Query: 539 cagaaagttataaaactttacagtgagataataaagatagaaacag 584
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cagaaagttataaaactttacagtgagataataaagatagaaacag 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_d13.g1 MSMg01no401_d13.g1 CHROMAT_FILE:
MSMg01no401_d13.g1 PHD_FILE: MSMg01no401_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:48 2005
(517 letters)
>mm_chr1_47087939_47088855
Length = 917
Score = 984 bits (509), Expect = 0.0
Identities = 515/517 (99%)
Strand = Plus / Plus
Query: 1 attctttgaatgtgtaagataaaaacttgaaagtcattggctcagggaagctttgttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttgaatgtgtaagataaaaacttgaaagtcattggctcagggaagctttgttggc 260
Query: 61 cattaagtttttgagattctaaatctctgacatgccaatattaatgtgtcattctcaaaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cattaagtttttgagattctaaatctctgacacgccaatattaatgtgtcattctcaaaa 320
Query: 121 ttaacaatttcttttgaacctttgagaactgaggttatagagcctaagaaagatatgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacaatttcttttgaacctttgagaactgaggttatagagcctaagaaagatatgaat 380
Query: 181 taagatgctatgcttatagagtacaaagtgccaaacagacaaataacaagcccaaaatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagatgctatgcttatagagtacaaagtgccaaacagacaaataacaagcccaaaatac 440
Query: 241 agcccatattctggtcagattgactaaatccctaatcataaattctcttagaaggaacag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccaaattctggtcagattgactaaatccctaatcataaattctcttagaaggaacag 500
Query: 301 tttctttattttctggtataaggatacttttaccttcattttcaagtaaaattgtaaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctttattttctggtataaggatacttttaccttcattttcaagtaaaattgtaaagg 560
Query: 361 atacaaaatcagaaggaaatacaatatcaagagccaaaccaatgaacagaaccagactca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacaaaatcagaaggaaatacaatatcaagagccaaaccaatgaacagaaccagactca 620
Query: 421 gaaaagtgagcaggacactctccaattataattactgtgttttaggctcaactagaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaagtgagcaggacactctccaattataattactgtgttttaggctcaactagaaatg 680
Query: 481 gtaaacatcgtgtaggatcagatgaaaattgtgagaa 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaacatcgtgtaggatcagatgaaaattgtgagaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
