Query= MSMg01no401_f07.b1 MSMg01no401_f07.b1 CHROMAT_FILE:
MSMg01no401_f07.b1 PHD_FILE: MSMg01no401_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:56 2005
(490 letters)
>mm_chr1_83355993_83356882
Length = 890
Score = 928 bits (480), Expect = 0.0
Identities = 487/490 (99%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 1 acgagaaaacagaattatctgttaaactagatcacacattttcctgttaagggtggtttg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 acgagaaaacagaattatctgttaaactagattacacattttcctgttaagggtggtttg 260
Query: 61 tgatccatctttggctctaccatctttgtgtctaccatcaagatctaagcggctttagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatccatctttggctctaccatctttgtgtctaccatcaagatctaagcggctttagaa 320
Query: 121 catatttaagttgaaccttgtgactctgcctatgtttgatcactttgggattgtaataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatttaagttgaaccttgtgactctgcctatgtttgatcactttgggattgtaataaa 380
Query: 181 aggcagtttcatagggttaaacctactaacaattgttcagaaacaatcgtagaattaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcagtttcatagggttaaacctactaacaattgttcagaaacaatcgtagaattaatg 440
Query: 241 aggttattttaaaaacttttaaatcttatctgtacatagatatacctatttacataaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttattttaaaaacttttaaatcttatctgtacatagatatacctatttacataaatg 500
Query: 301 tctttatgcatagattcatataggtatacagaaatattacatagatataatgataaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttatgcatagattcatataggtatacagaaatattacatagatataatgataaaatc 560
Query: 361 ctttagaatggagtttaatctgtgttcattaaggcattttcgtgctacgtagccaattgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttagaatggagtttaatctgtgttcattaaggcattttcgtgctacgtagccaattgc 620
Query: 421 ccaacattgctgttacttagggtctcttcatcactcccaactggttttaatttttttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaacattgctgttacttagggtctcttcatcactcccaactggttttaatttttttttt 680
Query: 481 tttgagtaaa 490
| |||||||
Sbjct: 681 t--gagtaaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_f07.g1 MSMg01no401_f07.g1 CHROMAT_FILE:
MSMg01no401_f07.g1 PHD_FILE: MSMg01no401_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:56 2005
(287 letters)
>mm_chr1_83522785_83523473
Length = 689
Score = 462 bits (239), Expect = e-135
Identities = 271/289 (93%), Gaps = 14/289 (4%)
Strand = Plus / Minus
Query: 1 attcttcacatggtagattttatgtatattggttacagcaaatatatatatatatatata 60
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 attcttcacatggtagattttatgtatattggttacagcaa------------atatata 499
Query: 61 tatatatatgagagataaaactgaaactctcaaattcttctaaatgaagatgttaagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 tatatatatgagagataaaactgaaactctcaaattcttctaaatgaagatgttacgata 439
Query: 121 ttgcatttattttactttaggtactctaaacacaactctgttgaagaaaacaaatcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgcatttattttactttaggtactctaaacacaactctgttgaagaaaacaaatcaaat 379
Query: 181 tatccaaccacatttaggcctgttatggcctgaagaaagggagggaggggaaagggagtg 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaccaaccacatttaggcctgttatggcctgaagaaagggagggaggggaaagggagtg 319
Query: 241 agaggtta-atagtatagaatggaagaaaggt-gggggggaatacgtgt 287
||||| || | ||||||||||||||||||||| ||||||||||||||||
Sbjct: 318 agaggctagagagtatagaatggaagaaaggtggggggggaatacgtgt 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 689
Length adjustment: 9
Effective length of query: 278
Effective length of database: 680
Effective search space: 189040
Effective search space used: 189040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
