BAC Information

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BAC

Clone NameMSMg01-401H21
Chromosome1 (Build37)
Map Location 10,321,208 - 10,495,483
singlet/doubletdoublet
Overlap geneCpa6
Upstream geneEG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneLOC433271, C030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401H21.T7 (MSMg01no401_h21.b1)MSMg01-401H21.TJ (MSMg01no401_h21.g1)
ACCAG500865AG500866
length759760
length of high quality
(start - end)		341 (332 - 672)522 (75 - 596)
definitionCHROMAT_FILE: MSMg01no401_h21.b1 PHD_FILE: MSMg01no401_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005CHROMAT_FILE: MSMg01no401_h21.g1 PHD_FILE: MSMg01no401_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,495,143 - 10,495,483)(10,321,208 - 10,321,729)
sequence
GCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCGCGC
GGAATCATTGATTGTGCCAAAAAATCCAGNCAAACCAGAAGCAATAGCAA
CAAAGAACCATTTTATTACTATCTAAAAAAATCTTAACTAAATGAAGCTC
AGTTCCTGTTGAGCCTACAAAAGCTTATCTATTCAGAAAGAGCAGACTTT
CTAAAATCTAAATCTACACACCCACTTCACCAAGTTCACATCCAAACCGT
CTCTCCATAAACCCACTAGATTTGGTCTCATCCCTGTCCGTGTCTGCCTC
TCTCTATCCATAAAATTTAGTGGGTTTTTTACAAAAAGTGCGCTAAAAGA
TGAATTTCAGGGGACACATTTAGTAATCACCAAGTATTAGAATAACACAG
TAGCATCCATCTTGGTGACTGCTATTTTGATACACTACTTTTTCCCTAAA
AAAAAGTCATTTTCATTAAAGTTTTCAATGATGATAGCTTAATGTATTCT
TTATATTTTAACTTGATGGGCCTGAGTTTAGGTCACTTTTTCATTGTTAA
TATTGGTCATTTGAAGATGCTTTTGTTCTTAAGATGAACTAATATTTTTC
TATTATAAATGTCTTCTCAGACCACCTTTTGGCTTTGTTGAGCCCTCTAT
AGCTTCCATATCATTAAGCATACTCTAGNATTTACCATGTCTTTGTCTCC
TTTTTTTTCTTTGCAGCTCTTGGCAGTTTTTGCAGTTCTTATTTTGTAGA
ATCCTGGCT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATTCCCGAAATTCATTGTGGATTTTCTAAGCACATGC
CATAACTTTCTTATAATTCACCCCTTCTCTGTCTCCTCCCTCCCTATCCA
CCCCTTTTCTACTCTTATGTCACATGTATTGTATTACCTTCTCTTTCCCC
TTAATCCCTCCCTTAAGATCACTTCCCCCTTTTCATGGTCCTCTTCACGT
TTCATGGCAGGTATACACGCCCCTACTCACCCTCACCCCATGTCTCCCTG
AGAGATTTTAGTTCGAGGTTTTTCTTTTTTTAGAAACCAAAAGGTGTTTG
TCTTTCTAAGTGGCCTATTTTGTACCAGAATGATTTTTAGCTTTACCCAT
TTTTTCCCCTGAAAATAGATGAATAAATTTCCATTTTTTACATGGACCAC
ATTTTCTTCATTCATCTGTTGGTGGGTTCCATTTCCTGGCTCTTGTGAGT
AGAGCAGTAGGTAACACGAATATGGTGACTTAGACTTTTGGGTATGGAGC
CAAGAATTGTGTAGCTGCCTGTTGAGGTAGTTCTATTTTTAGTTTTGGGG
GAACCTCCACGTGGGCTTCTATAGTGGTTGTGCCAGCTTATGGTTCCACC
ATAGTGTATAGGGTTAGTCTTTGCCATATCTTCCTCAGAATTACTGTTGG
AGTTCCTGTTGAAATCCCTCCGATTGCCGCGAGATATGCCTCCTTAGCAA
CTCCATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_h21.b1 MSMg01no401_h21.b1 CHROMAT_FILE:
MSMg01no401_h21.b1 PHD_FILE: MSMg01no401_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:08 2005
         (341 letters)



>mm_chr1_10494943_10495683
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaagtgcgctaaaagatgaatttcaggggacacatttagtaatcaccaagtattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaaaagtgcgctaaaagatgaatttcaggggacacatttagtaatcaccaagtattaga 482

                                                                       
Query: 61  ataacacagtagcatccatcttggtgactgctattttgatacactactttttccctaaaa 120
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 481 ataacacagtagcatccatcttgctgattgctattttgatacactactttttccctaaaa 422

                                                                       
Query: 121 aaaagtcattttcattaaagttttcaatgatgatagcttaatgtattctttatattttaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 aaaagtcattttcattaaagttttcaatgatgatagcttaacgtattctttatattttaa 362

                                                                       
Query: 181 cttgatgggcctgagtttaggtcactttttcattgttaatattggtcatttgaagatgct 240
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 361 cttgatgggcctgagttttggtcaccttttcattgttaatattggtcatttgaagatgct 302

                                                                       
Query: 241 tttgttcttaagatgaactaatatttttctattataaatgtcttctcagaccaccttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgttcttaagatgaactaatatttttctattataaatgtcttctcagaccaccttttg 242

                                                    
Query: 301 gctttgttgagccctctatagcttccatatcattaagcata 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctttgttgagccctctatagcttccatatcattaagcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_h21.g1 MSMg01no401_h21.g1 CHROMAT_FILE:
MSMg01no401_h21.g1 PHD_FILE: MSMg01no401_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:08 2005
         (522 letters)



>mm_chr1_10321008_10321929
          Length = 922

 Score =  971 bits (502), Expect = 0.0
 Identities = 517/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgtggattttctaagcacatgccataactttcttataattcaccccttctctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattgtggattttctaagcacatgccataactttcttataattcaccccttctctgtct 260

                                                                       
Query: 61  cctccctccctatccaccccttttctactcttatgtcacatgtattgtattaccttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccctccctatccaccccttttctactcttatgtcacatgtattgtattaccttctct 320

                                                                       
Query: 121 ttccccttaatccctcccttaagatcacttcccccttttcatggtcctcttcacgtttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccccttaatccctcccttaagatcacttcccccttttcatggtcctcttcacgtttca 380

                                                                       
Query: 181 tggcaggtatacacgcccctactcaccctcaccccatgtctccctgagagattttagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcaggtatacacgcccctactcaccctcaccccatgtctccctgagagattttagttc 440

                                                                       
Query: 241 gaggtttttctttttttagaaaccaaaaggtgtttgtctttctaagtggcctattttgta 300
           |||||||||| | |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtttttcatgtaagagaaaccaaaaggtgtttgtctttctaagtggcctattttgta 500

                                                                       
Query: 301 ccagaatgatttttagctttacccattttttcccctgaaaatagatgaataaatttccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaatgatttttagctttacccattttttcccctgaaaatagatgaataaatttccat 560

                                                                       
Query: 361 tttttacatggaccacattttcttcattcatctgttggtgggttccatttcctggctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttacatggaccacattttcttcattcatctgttggtgggttccatttcctggctctt 620

                                                                       
Query: 421 gtgagtagagcagtaggtaacacgaatatggtgacttagacttttgggtatggagccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgagtagagcagtaggtaacacgaatatggtgacttagacttttgggtatggagccaag 680

                                                     
Query: 481 aattgtgtagctgcctgttgaggtagttctatttttagtttt 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattgtgtagctgcctgttgaggtagttctatttttagtttt 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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