BAC Information

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BAC

Clone NameMSMg01-401I07
Chromosome1 (Build37)
Map Location 10,860,090 - 10,860,357
singlet/doubletsinglet
Overlap genenone
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401I07.T7 (MSMg01no401_i07.b1)MSMg01-401I07.TJ (MSMg01no401_i07.g1)
ACCAG500884AG500885
length734737
length of high quality
(start - end)
124 (126 - 249)520 (84 - 603)
definitionCHROMAT_FILE: MSMg01no401_i07.b1 PHD_FILE: MSMg01no401_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:10 2005CHROMAT_FILE: MSMg01no401_i07.g1 PHD_FILE: MSMg01no401_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCTAAATTTGCGGCGCTAAACGACTCCTATTTTCCGAGCAGGGGC
GGAANNCNAAAGTATTCGNAAAACTGAGGNAGGGNNNNACGGANGNGAAC
AGACACCAGGACCAAGGTTACTCCTATAAGGACAACATTTAAAAGAGACT
GGCTTACAGGTTCAGATGTTCAGTCCATTATCCTCAAGGTGGGAACATTG
AGGCATCTATAGAGACAGGCATGATTCAGGAGGAGCTGAGTGTTCTACTT
CTTCATCTGAAGACTGCTAGCAGAATACTGACTTCCAGGCAGCTAGGATT
AGGGTATCAAAACCCCTTTTTTTTTATAGCAGGCANCGNGNANGNGCAGC
TCCCAGNTTGATTTTACCCACAGCTGTATTGGGATCACAGCAGACATTCA
CCAACAGTCTTTCCATTTCACCCAATTGTTCTCAGGGCCTGCCAGCTGTC
AAAGGAACTCACATCCAGAATCCAGACTACATGGCTCAGATGAAGAGACC
TGTTTACTAAGATGAAGAACATTATGAAAGGTAAATCTTATTACTGAGCA
TAACTGTTCAAGGTCCTTGTAATTATCTTACCAAGGCATTTTATAGATTG
CATAGAGAAAAGCAAAGCCCTGTAGCTGTAAGAAGACAGGAAAGGATTCC
TCTTTTTTTTTTTTTGTTTGTAGCAGACTTCTGGATTTTCCCCCCCCCGT
ATCTTTTCCCCCCTTCTTTTCCTACATTTCTTCC
TTTTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGCAAGAGAAAGCT
GCCATGAGCAAACAATCAAGAACAGTCGTCCATGGACTGAAGAGAGACTG
CTCAACCATTTAAAGTACTTGTTGCTGTGGCAGAGGACCCAAGTCCAATT
TCCAGCACCCACATGGTGGCTTGCAGACTTCTGAAATTCCAATTCTAGTG
AATCTCTCTTGCCTCTGCAGGAATACATGCAGAAAAATATATAAAATAAA
AGTATAAGTTGAATAAAGTTTATTTAATTTTTAGCCCTTAAAGGACTCAT
GTTCTTAGATAATTAATTATCTAAATTCATGTATCATTGTCATATACATA
GAATTTAAAACCACATCACTGTAAATACCTACCTGTAAAAGTGTTCATTT
CAGTATTATTCATAGTGGCTACAATTGTAAACAACCAAAGTGGGTATCAA
GAGGATTGCTCTATGAAAGTTGTAATATGTCCATGTCTCAGGCTGGGATT
GTGGGAAGCTGAGAATGAAAGTATGCAGATGTTTTATAAAGGCTAGAACC
AGGGATCAAGAAGAGAAAAATGTANATTCAGCTTACATCTTACCTCATCT
GATCCCCCAGAGTATCTGATGCCTAATGGAAACAAAAATGCCAGCAAGCC
AAGCTTCCTGACTCTCATAGCCCATTGCCATCGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_i07.g1 MSMg01no401_i07.g1 CHROMAT_FILE:
MSMg01no401_i07.g1 PHD_FILE: MSMg01no401_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:10 2005
         (520 letters)



>mm_chr1_10859478_10860397
          Length = 920

 Score =  441 bits (228), Expect = e-128
 Identities = 258/268 (96%), Gaps = 1/268 (0%)
 Strand = Plus / Minus

                                                                       
Query: 250 agcccttaaaggactcatgttcttagataattaattatctaaattcatgtatcattgtca 309
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 880 agcccttaaaggactcatgttcttagataattaatgatctaaattcatgtatcattgtca 821

                                                                       
Query: 310 tatacatagaatttaaaaccacatcactgtaaatacctacctgtaaaagtgttcatttca 369
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 820 tatacatagaatttaaaaccacatcactgtaaatgcctacctgtaaaagtgttcatttca 761

                                                                       
Query: 370 gtattattcatagtggctacaattgtaaacaaccaaag-tgggtatcaagaggattgctc 428
           ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 760 gtattattcatagtggctataattgtaaacaaccaaagatgggcatcaagaggattgttc 701

                                                                       
Query: 429 tatgaaagttgtaatatgtccatgtctcaggctgggattgtgggaagctgagaatgaaag 488
           |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 700 tatgaaagctgtagtatgtccatgtctcaggctgggattctgggaagctgagaatgaaag 641

                                       
Query: 489 tatgcagatgttttataaaggctagaac 516
           ||||||||||||||||||||| ||||||
Sbjct: 640 tatgcagatgttttataaaggatagaac 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)