Query= MSMg01no401_j15.b1 MSMg01no401_j15.b1 CHROMAT_FILE:
MSMg01no401_j15.b1 PHD_FILE: MSMg01no401_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:16 2005
(535 letters)
>mm_chr1_169188146_169189080
Length = 935
Score = 598 bits (309), Expect = e-175
Identities = 369/399 (92%), Gaps = 17/399 (4%)
Strand = Plus / Plus
Query: 153 agggcctacaggattctggcagtttatctatatattttttatacacacacacatacacac 212
|||| ||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 337 agggactacaggatcctggcagtttagctatatatttcttatacacacacacacacacac 396
Query: 213 ----------------atacatatatacacatacacacacacatatgtgtgtgtttgaaa 256
||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct: 397 acacacacacacatatatatatatatacacatacacacacacacgtgtgtgtgtctgaaa 456
Query: 257 atgattatatatattctagtgacatatcactattgtagagaatttgtgccttttcatttt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgattatatatattctagtgacatatcactattgtagagaatttgtgccttttcatttt 516
Query: 317 tatgtctattttcacattttattctcctaacagcagagtgccacaggcaggctacttatc 376
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 517 tatgtctattttcacattttattctcctaacagcagagtgccacagacaggctactcatc 576
Query: 377 catttcaaagatagtcaaaacccagaaacatcaactgagagtagagtgtaactttaaaaa 436
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catttcaaagatagtcaaaaaccagaaacatcaactgagagtagagtgtaactttaaaaa 636
Query: 437 caaactatttttagtgatgattcttaaacatttttaacctccctgctagcccaccaccca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caaactatttttagtgatgattcttaaacatttttaacctccctgctagcccaccaccca 696
Query: 497 ccagaagtatcataaaagaacggattgggggcgaggggg 535
|||||||||||| ||||||||||||||||||| ||||||
Sbjct: 697 ccagaagtatcagaaaagaacggattgggggc-aggggg 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_j15.g1 MSMg01no401_j15.g1 CHROMAT_FILE:
MSMg01no401_j15.g1 PHD_FILE: MSMg01no401_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:16 2005
(605 letters)
>mm_chr1_169277214_169278218
Length = 1005
Score = 1004 bits (519), Expect = 0.0
Identities = 578/606 (95%), Gaps = 20/606 (3%)
Strand = Plus / Minus
Query: 1 gaaggaggaaaactgcaggggctcagagagcagc-aaaggagaagcatcctcaggtgggt 59
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 673 gaaggaggaaaactgcaggggctcagagagcagcaaaaggagaagcatcctcaggtgggt 614
Query: 60 gaaagctggcaggcagacattctcagcgaaagacttgatggggaaggggaaagaagacag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaaagctggcaggcagacattctcagcgaaagacttgatggggaaggggaaagaagacag 554
Query: 120 ccctcaaaaaaagcaagcccagaagtttacttaaagccaagctggggggactccaaagtc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccctcaaaaaaagcaagcccagaagtttacttaaagccaagctggggggactccaaagtc 494
Query: 180 cctcagttctgttttcttcctagagaactggaggcacagaagaaatataactcagtcacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cctcagttctgttttcttcctagagaactggaggcacagaagaaatataactcagtcacc 434
Query: 240 tttccttctttcttgctccccaaggagaaagtccttggaaatccaacttctcactgaagg 299
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttccatc-tccaggctccccaaggagaaagtccttggaaatccaacttctcactgaagg 375
Query: 300 ccattcctccccacgacccccaagcatcctggtgtcaggctatttattgctagagttcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccattcctccccacgacccccaagcatcctggtgtcaggctatttattgctagagttcag 315
Query: 360 ttttacattagttacacccttacatgcccacagacacacacttttattccctgaacatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttttacattagttacacccttacatgcccacagacacacacttttattccctgaacatta 255
Query: 420 atgactataactcttgttatttcttcaataagccagaaaactattcacaaatacagaaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atgactataactcttgttatttcttcaataagccagaaaactattcacaaatacagaaag 195
Query: 480 aagaaagaaagaaagaaagaaagagagagagagagagaaagaaagaaagaaagaaagaga 539
|||||||||||||||| |||||| | ||||||||||| || ||||||||
Sbjct: 194 aagaaagaaagaaaga------gagaga-a-agagagaaaga--ga------gaaagaga 151
Query: 540 gagagagagagagagagagagataaagagagagagaataattcanaatctagtctggttc 599
||| | |||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 150 gagggggagagagaaagagaga--aagagagagagaataattcaaaatctagtctggttc 93
Query: 600 ctgtac 605
||||||
Sbjct: 92 ctgtac 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
