BAC Information

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BAC

Clone NameMSMg01-401L05
Chromosome1 (Build37)
Map Location 45,498,949 - 45,499,197
singlet/doubletsinglet
Overlap geneCol5a2
Upstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneEG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401L05.T7 (MSMg01no401_l05.b1)MSMg01-401L05.TJ (MSMg01no401_l05.g1)
ACCAG501022AG501023
length714742
length of high quality
(start - end)
249 (333 - 581)243 (87 - 329)
definitionCHROMAT_FILE: MSMg01no401_l05.b1 PHD_FILE: MSMg01no401_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:23 2005CHROMAT_FILE: MSMg01no401_l05.g1 PHD_FILE: MSMg01no401_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGNNGCNCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAG
GATCCGCGGAATTCTCAAATCCCTTTCATAGGAGAACTAACAACTTGCCT
TTATTTTCCAGTGATTATTGCTTTTAGTGAATAATCATAGCAACTAACTC
AGTGACTTCAGAGAGTAATGATTTTGAAATCACTGTGAAAAGTGTATATA
TTCATAATTTTAAAGTGTTCTGAGCTTCCTGGAGTAAGTAAGGAACCTTT
TTTTCTCTACTTAGGCCATTAACACAGAAATAGACAGTAATTTTTTGTCG
TAATTGTCAGAAGACCTTACTTTGTATTGTCTTATCTAATTAGAGAACAA
TTTGTGCCTTATGGATGGCTGCTGTTATTGGGTTATGAAAGGGGCCTCCA
TGATAATTAGTTGACTTTCTATTATATTTCTTAATGTTAAGGAAACACAG
AAAATATATTTATTGTCTCCTTTACAAGGTTCACTCTAGAGAATGCAGTA
ATTATTCTTAATATAATTTACTGTTCTAGCAACTTCTCTTACATTGTCTC
AACAATCTAGGGTATGAGTAATGTGCACCACACAATAGAAGGAAATGGAA
TCAATTTCTTGGAGAANAGAATGCACCAGTTTACTGGTTTAAAAATATTT
TTGCAAGAAAAAATCTGTGTTTAAATGAAATATATTTTCGACTATGCAAC
AAAAATACAGGATN
NTTTCCTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTGCTGAGAA
GCAAAATGCAGATCCAAGAACAGAGAGCATGTACACTTTCCTGACATCTT
TCAGGAACCATGGTGCAGTACAGCAAAAGAAAAGAAAGAAAGGAGTAGAG
AAGGAAGAAAGAGGAATAGGAGGAGCAAAGGGAGGGAAGAGTGGGGAGAG
AGAGAAGAAGAAGGAAGGAACAGAGAGTAGGAAAGAGACACTGGGTGCAG
ATACAGATGGAAGAAGCATTGAGGCATATTTTTATTTAAAGAAGAGTACA
CATAGAGAAAAGGTCAGTATCGCTGTCTTGGTCAGGTTTTATAGAAGCCA
CTGTTTGTCATTCTGCGACATGATACTTTTAATGGTCACATAAAGCATTT
TAATTTGAAGGAAGAGTAAGAAAGCAAAATGTACATAGTTCTTCCTTGAA
TGTGTATGGCTAATTATAAGAAGGAAAAGAACAAATTTAAATAACAATTG
TTTTATAATGTTTTATAACATGAACTTTTCTGAAAAGTATATTTGTGGCC
TGAAATTACTTATTACTGAACAATGAGCAAATAACTGCATGTAATACGCT
ATGGACACAAAACGAGCCTTTTTTTATCCCACTTTCCTTTTTTGGCCCGC
CCCCCCCTTCCCTTTTCCTGGTTCTGGTTCCTGTATCTGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_l05.b1 MSMg01no401_l05.b1 CHROMAT_FILE:
MSMg01no401_l05.b1 PHD_FILE: MSMg01no401_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:23 2005
         (249 letters)



>mm_chr1_45498749_45499397
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctaattagagaacaatttgtgccttatggatggctgctgttattgggttatgaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tatctaattagagaacaatttgtgccttatggatggctgctgttattgggttatgaaagg 390

                                                                       
Query: 61  ggcctccatgataattagttgactttctattatatttcttaatgttaaggaaacacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggcctccatgataattagttgactttctattatatttcttaatgttaaggaaacacagaa 330

                                                                       
Query: 121 aatatatttattgtctcctttacaaggttcactctagagaatgcagtaattattcttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatatatttattgtctcctttacaaggttcactctagagaatgcagtaattattcttaat 270

                                                                       
Query: 181 ataatttactgttctagcaacttctcttacattgtctcaacaatctagggtatgagtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataatttactgttctagcaacttctcttacattgtctcaacaatctagggtatgagtaat 210

                    
Query: 241 gtgcaccac 249
           |||||||||
Sbjct: 209 gtgcaccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)