Query= MSMg01no401_l21.b1 MSMg01no401_l21.b1 CHROMAT_FILE:
MSMg01no401_l21.b1 PHD_FILE: MSMg01no401_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:26 2005
(438 letters)
>mm_chr1_72985092_72985929
Length = 838
Score = 642 bits (332), Expect = 0.0
Identities = 375/401 (93%), Gaps = 20/401 (4%)
Strand = Plus / Minus
Query: 39 tatttctatttgagaccaggcaactggactgtgttcgtgccatggttattatgaggaatg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tatttctatttgagaccaggcaactggactgtgttcgtgccatggttattatgaggaatg 779
Query: 99 gcacagttgtttcatgtttcaacatcccctttgccaaagcttaccaccaccactcccttt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gcacagttgtttcatgtttcaacatcccctttgccaaagcttaccaccaccactcccttt 719
Query: 159 atacacacacacacacacacacattttcacacacacacacacacacacacatgcacacat 218
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 718 atacacaca------------------cacacacacacacacacacacacatgcacacac 677
Query: 219 gcacacacacatacacacacacggggcaatagcctant-acccttcttcaagtagtggtc 277
||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 676 gcacacacacatacacacacacggggcaagag-ctaatgacccttcttcaagtagtggtc 618
Query: 278 tataatgactattaatttttgctttaagggatgcagtttttcaacaaaacttaaataagt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tataatgactattaatttttgctttaagggatgcagtttttcaacaaaacttaaataagt 558
Query: 338 gtaaccctaaaaagccggagtaaagaattttccacctctcaaatacatgaagttaacgta 397
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 557 gtaaccctaaaaaaccggagtaaagaattttccgcctctcaaatacatgaagttagcgta 498
Query: 398 ttttttattataaaagaaaaatgaatgcaaggccctcctgg 438
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttttttattataaaagaaaaatgaatgcaaggccctcctgg 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_l21.g1 MSMg01no401_l21.g1 CHROMAT_FILE:
MSMg01no401_l21.g1 PHD_FILE: MSMg01no401_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:26 2005
(469 letters)
>mm_chr1_72829029_72829896
Length = 868
Score = 853 bits (441), Expect = 0.0
Identities = 462/469 (98%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 1 cagagatgggcctgagtgtggtgattagtgagggtctgtatgcatctaatatgaatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagatgggcctgagtgtggtgattagtgagggtctgtatgcatctaatatgaatccat 260
Query: 61 ttggaaacgcaagaagaccaaggagacaggacatgtttttggagcctgagttgggatcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaaacgcaagaagaccaaggagacaggacatgtttttggagcctgagttgggatcgg 320
Query: 121 gatggcacagcacagtgaccaaaccttagacttcggtctcctttcagtacatcatcttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggcacagcacagtgaccaaaccttagacttcggtctcctttcagtacatcatcttgc 380
Query: 181 catggtatctgtttacccatctgtaaaatgaagcagcagaccaatgcctggtccggcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggtatctgtttacccatctgtaaaatgaagcagcagaccaatgcctggtccggcatt 440
Query: 241 caaatggtattttgttacctgtggccaggtgcccaaatctttggcacaactttagcttca 300
||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatgggaatgggg-acctgtggccaggtgcccaaatctttggcacaactttagcttca 499
Query: 301 gcagcttccccacaaacccagtgctggaccacagggtgtctgggccaggaatctcataac 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 gcagcttccccacaaacccagtgctggaccacagggtgtctgggtcaggaatctcataac 559
Query: 361 cagaagcgttctgaaactccttctgcgttcatcctacagtgaaagaaaatgggttcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagaagcgttctgaaactccttctgcgttcatcctacagtgaaagaaaatgggttcagaa 619
Query: 421 ggccaagccagcgggagatgtggtaaaagagcaccagatgagtctgcaa 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggccaagccagcgggagatgtggtaaaagagcaccagatgagtctgcaa 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 868
Length adjustment: 10
Effective length of query: 459
Effective length of database: 858
Effective search space: 393822
Effective search space used: 393822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
