BAC Information

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BAC

Clone NameMSMg01-401O03
Chromosome1 (Build37)
Map Location 94,913,042 - 94,913,340
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12
Downstream geneKif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401O03.T7 (MSMg01no401_o03.b1)MSMg01-401O03.TJ (MSMg01no401_o03.g1)
ACCAG501162AG501163
length774745
length of high quality
(start - end)
---299 (333 - 631)
definitionCHROMAT_FILE: MSMg01no401_o03.b1 PHD_FILE: MSMg01no401_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:37 2005CHROMAT_FILE: MSMg01no401_o03.g1 PHD_FILE: MSMg01no401_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCGTACATTACACACGGCAGAANAACGACTACATTCTCCACATCCCC
NNAANNCNCNCCATTTTCAACACCATCTNGNNNNANGANACCANNCTCCC
TGACACATCCANAATCCTNNAATATCCTTGTATTTCCCACCCCAACTCCC
TCCGCATGCCTATCCTCTCATCCCCTTTCCTCAANCACTCACATAAATTG
TATACCCTGTTCTCTCTCCTCCATTCATCAACAATCTCACCACCCCACCT
GTTCTTTTCCACTGCTCTTGTTTCTTACCCTCTAAAAACCATCTNTAAAA
TATGTCCTTACAAATATTTTATCTTTTTACACAAACCTATATCTCACCTA
CTAACNCTTTTCTACTTCCCCTCCACACCCCTCCTCCACCTTCCCTTATA
AATACACTCTACCTTATCCCCCTATCTCTTCTTCCCTTATTCCATTTTCT
ATATATCATACCTTATTCCTGATCCAATTTACTCCCTATCTCCTCCTCAT
TCTTTTCTCCCCCCCCCAATACTTTCCCATTTCACTACACACCTCTCTAA
ATACCCTTCTTCATTCCTATTTCCCTATTCACCTCTTTATTTTCACTCCC
CATATCACTTATCTTACATACCTTTCAAAATCCATTAACCCATTCCTCAC
TCCCTTACCTCCACTTTTTTTTCTTTTTCTTTATTCCTATTTCTTCCCTT
TTTTCTACCTCTCTACTTTTCTTCCCACTCCCCTTTTTTTCATCTTACGT
TGCGTGCCCCCCACCGTATTCCCG
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCAGAAAAATTCACCCATCACTGGGGTCAGGT
GCCATATGGGTAGCCACCCTCATGCATGGCCACCCTCATCCCCAGGACTT
GAGCTAATAGTCATTAGCATCAAGTGTCAGGGAACCCTCTCCATGAAGTA
TAGAATAAGACTCATTCCCAAGAATCCAAATCAAGGTACCCATCCCAGAG
CAAGATTAATCTAGAAACCAGGTGACCTGAGCTGTCCGCGGTGGACTGTG
GAGGCAGGAGGTTGAGATACATATTTTTATTAAGACACCTGTGTTAAGAA
GCTCACTCTGGTGCTCATGACCAGGAGGGAAGGAGCGGGTTGCTTCAATT
TCTTGGTTCCCAAGGGCCACACAGCCCCCAGCAGGCAGAAAGGCAGTCAT
GGCTTGCCACACTCGCTCAGGTCAACCAGCCTGAAGCTGAGGCCTTGCAA
GAGTCCAGCTCCACCCAGGAGGTGGGTGTCTGAGGCCAGCCAACCTACAG
AGCACCTGTGCCTGGGTCGGGTTATAGAAAGGTTGGGAGCTCTAGTGCCC
ACCCCACCCCCATTCAGGGGCCATTCCATACTGGCTGTCCTGGCATTGTC
TACGAACCAAGATGTTCTCTTGGCTTTTGCGGGGGTTCTGAGTCTTAACC
TAGTAACCTGAACTGATGGATCCAGAAATCTGTCTTTAGCTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_o03.g1 MSMg01no401_o03.g1 CHROMAT_FILE:
MSMg01no401_o03.g1 PHD_FILE: MSMg01no401_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:37 2005
         (299 letters)



>mm_chr1_94912842_94913540
          Length = 699

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacacctgtgttaagaagctcactctggtgctcatgaccaggagggaaggagcgggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agacacctgtgttaagaagctcactctggtgctcatgaccaggagggaaggagcgggttg 440

                                                                       
Query: 61  cttcaatttcttggttcccaagggccacacagcccccagcaggcagaaaggcagtcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttcaatttcttggttcccaagggccacacagcccccagcaggcagaaaggcagtcatgg 380

                                                                       
Query: 121 cttgccacactcgctcaggtcaaccagcctgaagctgaggccttgcaagagtccagctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgccacactcgctcaggtcaaccagcctgaagctgaggccttgcaagagtccagctcc 320

                                                                       
Query: 181 acccaggaggtgggtgtctgaggccagccaacctacagagcacctgtgcctgggtcgggt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 319 acccaggaggtgggtgtctgaggccagccaacctccagagcacctgtgcctgggtcgggt 260

                                                                      
Query: 241 tatagaaaggttgggagctctagtgcccaccccacccccattcaggggccattccatac 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 tatagaaaggttgggagctctagtgcccaccccacccccattcaggggccatgccatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)