BAC Information

Click to search

BAC

Clone NameMSMg01-401P13
Chromosome1 (Build37)
Map Location 105,872,613 - 105,872,867
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P13.T7 (MSMg01no401_p13.b1)MSMg01-401P13.TJ (MSMg01no401_p13.g1)
ACCAG501230AG501231
length733724
length of high quality
(start - end)
242 (78 - 319)260 (377 - 636)
definitionCHROMAT_FILE: MSMg01no401_p13.b1 PHD_FILE: MSMg01no401_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:43 2005CHROMAT_FILE: MSMg01no401_p13.g1 PHD_FILE: MSMg01no401_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAAAGAATCTATATTTGCGGCGCTAAANGACTCACATTCAAAGATGGAT
CCGCGGAATCTTTGTTACGAACAGTGTGACATTTTANAGGTTTTAAAAAT
ATGTATCTTCTCATCAATCTATTTTAGTTACTAGCCCTCTAGAAGATGTA
TACTTGTTAAGCAATTGTAGTTCCAGCTATGTTAGTCCAACAAGGGCTGA
TTTTGGTCATACAGAAACATTTCAGTTTTACAAAGTCCCATTTAGTAATT
ATGTGTTTTAATGCCTGTGCTATGGGTACTTTGTAAAGAAAGCCCTTTTT
TCTGCTCCAGAGTTCAAGATTACTANCTATATTGCATTCTATCAGATTCC
AATATCTGGTCTTATGCTGAGGATTTGATCCATTTGGAATTGAGTTTTGT
ACAAGGCAATGGCTATGGACCTACTTGGATTCTCCTACAGGAAGTTTTCC
AGTTTGACCATTTGCTGAAGATGATGTTTTTCTTCATGTCTGTGGTGGGT
TATTTTGTTTTTGATTTCGTTTCGTTGCCTTTTCCCTTCTTCTTCCCCCT
TCTTTTCCTTTTTTTTCCCCTCTTCTCTTCTCTCTTTTTCCCCTTCGCTC
CTATCTCTCCTTTACCCCCCGCCTTTTTTTTCTTCTTCTTTCTTCTCCCC
TCCTTCCTTTTTTCTCTCCTTTTTCCCCTTCTCCTTTCCTTTTTTCCCTT
TTTCGCTTTTTTCCCATTCTTCCCTTTTCCCTC
GCTTCCCCCCGAATGAAGTGGGTAGGCCTGGGGGNCGCCTTTTTCAAAAC
ATGAGGTGACACTATAGAATGACCAAAAAAATTCACTCATGCCCTAGTGT
TTATGCTACTTTAGATATTACTGTTTCTGACATGCAAATATACCATTAAA
TTATTTATTTATGAGTTATGGTAGACCTATATAGCCCTCGCTGCCTTGGG
ACTCTCTTTATAGATTAGACTAGCCTCAAACTCACAGTGATCCACTTTCC
TCTTCTTCTTGAATTCTGAGATTAAAAACATGCATCACTATGGTCAGCTC
TATAATTATTTATAAATATATATTANTTGANGCCATAAGAACTGGATTTG
AATACAAAGAAAATATTGTCCTCCAAGGGATAACATTTACTATTTCAACA
TTGTAGAGAGGTAATAATAGCAATCTCCCAGTTATCTAGATCATGGCTCA
AATAATAGATCTTTCTTGATGGAAGTTACTTAAAATATCTTTATCAAAGA
AAGTGTGCATATGAGAAGTTTAAAATATATTGTGTTAGAAAAATATTAGA
AAAAAATAGACTTTGTGTTTCTAGAAGATAAAATTCAATATGGAAAACTC
AGTAGGATGAGTCTCTTGAATTTGACCTATTTTCTAGGAAAGCCAGGTAA
AAACCCTAGGTTATTCATACTTATTTTTGCCAGGAGAAACAAGTTCTTTC
CAGGATGGCCAGTCACAAGCAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p13.g1 MSMg01no401_p13.g1 CHROMAT_FILE:
MSMg01no401_p13.g1 PHD_FILE: MSMg01no401_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:43 2005
         (260 letters)



>mm_chr1_105872413_105873071
          Length = 659

 Score =  472 bits (244), Expect = e-137
 Identities = 253/256 (98%), Gaps = 1/256 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggataacatttactatttcaacattgtagagaggtaataatagcaatctcccagttatc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gggataacatttactatttcaacattgtagagaggtaacaatagcaatctcccagttatc 260

                                                                       
Query: 61  tagatcatggctcaaataatagatctttcttgatggaagttacttaaaatatctttatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagatcatggctcaaataatagatctttcttgatggaagttacttaaaatatctttatca 320

                                                                       
Query: 121 aagaaagtgtgcatatgagaagtttaaaatatattgtgttagaaaaatattagaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 aagaaagtgtgcatatgagaagtttaaaatatattgtgttagaaaaatattagaaaaaa- 379

                                                                       
Query: 181 tagactttgtgtttctagaagataaaattcaatatggaaaactcagtaggatgagtctct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagactttgtgtttctataagataaaattcaatatggaaaactcagtaggatgagtctct 439

                           
Query: 241 tgaatttgacctattt 256
           ||||||||||||||||
Sbjct: 440 tgaatttgacctattt 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 659
Length adjustment: 9
Effective length of query: 251
Effective length of database: 650
Effective search space:   163150
Effective search space used:   163150
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)