Query= MSMg01no402_d12.b1 MSMg01no402_d12.b1 CHROMAT_FILE:
MSMg01no402_d12.b1 PHD_FILE: MSMg01no402_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:02 2005
(579 letters)
>mm_chr1_119081008_119081986
Length = 979
Score = 1089 bits (563), Expect = 0.0
Identities = 575/579 (99%)
Strand = Plus / Plus
Query: 1 tgttcataataagttttcataagaccaaattctctccctaagaacaatttaatcactggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcataataagttttcataagaccaaattctctccctaagaacaatttaatcactggc 260
Query: 61 tcagtttaccttttaagctaaaacattttgtctcttccattcccttagtgcaaattgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtttaccttttaagctaaaacattttgtctcttccattcccttagtgcaaattgtct 320
Query: 121 gtcttgtctgagtgacatcaactatgagtgaaggatggcttgtagaggagccactgctgc 180
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gtcttgtctgagtgacatcagctatgagtgaaggatggcttgcagaggagccactgctgc 380
Query: 181 ttaaagcacatcttaaatggcagggctatgatggattcaattctgcttgtccttgagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagcacatcttaaatggcagggctatgatggattcaattctgcttgtccttgagaaa 440
Query: 241 aggcagggactgcatgttggcttataattgttctgccttgcttaaaggtagaacacttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcagggactgcatgttggcttataattgttctgccttgcttaaaggtagaacacttgg 500
Query: 301 ctgatgagacattgatttgtttcaaatttgtgtctctttcagccccagggaatatcccag 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatgagacattgattcgtttcaaatttgtgtctctttcagccccagggaatatcccag 560
Query: 361 gattgaaattgacatggagcaggaagaaatgaatgtgtagaggctgtggagccctgacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattgaaattgacatggagcaggaagaaatgaatgtgtagaggctgtggagccctgacac 620
Query: 421 tgatattgatgaggcaatgtccttggtagattttctttctgtatcttttctccatcacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatattgatgaggcaatgtccttggtagattttctttctgtatcttttctccatcacag 680
Query: 481 aaaaagcatcctaggaccacagcaagttctaaaactatgtgcacaattaacacattggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaagcatcctaggaccacagcaagttctaaaactatgtgcacaattaacacattggaa 740
Query: 541 aacccatttatgttacttcaaagaggaaaagaaacatta 579
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 aacccatttatgttacttcaaagaggaaaagaaatatta 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_d12.g1 MSMg01no402_d12.g1 CHROMAT_FILE:
MSMg01no402_d12.g1 PHD_FILE: MSMg01no402_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:02 2005
(474 letters)
>mm_chr1_119229823_119230696
Length = 874
Score = 766 bits (396), Expect = 0.0
Identities = 454/480 (94%), Gaps = 14/480 (2%)
Strand = Plus / Minus
Query: 1 aaggctctttaccagtttctcttcaattatattcagtgtatctggttttatgttgaggtt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaggctttttaccagtttctcttcaattatattcagtgtatctggttttatgttgaggtt 591
Query: 61 cttgatccatttgaacttgagttacaagtgctcttaatggatgaatcatttctttagaac 120
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 590 cttgatccacttgaacttgacttgcaagtgctcttaatggatgaatcatttctttagaac 531
Query: 121 tggtgtatacttttctctgtttcgttgtatgtttttattttttattaaaaatacacgtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tggtgtatacttttctctgtttcgttgtatgtttttattttttattaaaaatacacgtag 471
Query: 181 aactggaaatacgatgtcacatggtaaagttcattaaaacttgaagaattatatagatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aactggaaatacgatgtcacatggtaaagttcattaaaacttgaagaattatatagatgt 411
Query: 241 gtcctttatcaactcacactttatgttcttgaaagct-----a-----cata---tgaga 287
|||| |||||||||||||||||||||||||||||| | | || || ||
Sbjct: 410 gtccaaaatcaactcacactttatgttcttgaaagcttgtgaattttgc-tatgttgtga 352
Query: 288 attttgcctcatcaaagtgaactgatgtctttcttcatagtcattccagagtaggcacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attttgcctcatcaaagtgaactgatgtctttcttcatagtcattccagagtaggcacaa 292
Query: 348 gcataccaatgaagtttgaacttgtattctccaaaaacagttaatattgaataattataa 407
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 291 gcgtaccaatgaagtttgaacttgtattctccaacaacagttaatattgaataattataa 232
Query: 408 ataatatatgtgtgtatatgtgacatttgtatattttctttaaaatgtgattggagtctc 467
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 231 ataatatatatgtgtatatgtgacatttatatattttctttaaaatgtgattggagtctc 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
