BAC Information

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BAC

Clone NameMSMg01-402N05
Chromosome1 (Build37)
Map Location 89,095,434 - 89,095,678
singlet/doubletsinglet
Overlap geneChrnd
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik
Downstream geneChrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402N05.T7 (MSMg01no402_n05.b1)MSMg01-402N05.TJ (MSMg01no402_n05.g1)
ACCAG501881AG501882
length788778
length of high quality
(start - end)
243 (71 - 313)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no402_n05.b1 PHD_FILE: MSMg01no402_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:52 2005CHROMAT_FILE: MSMg01no402_n05.g1 PHD_FILE: MSMg01no402_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTC
TCNGGCATTGCCTGAAATCTGGGGAGCCACCTCTGGTCCTCATACTTATG
CAAAAAGTGTTTTAACCACTTGGCATTCTCCCCAGCTCTCATTCCTTTTT
ATTGCTGAATAAAACTCCACTGTGCGTATGTACCACATTTTCTGTATCCC
TTCTTCCCTTGATGGGATCTAGACTGGTTCTGTAGAAGTGCCATGATTAC
TGCTTTGGTACAGATCGATGTCTGTGTTGTGCTGACTTTGTACTCCCTTC
AGACAGATGTCCTTATTTTTTAGAACTGGATCATAGGATAGTGCTATTTT
CTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CATTTTTTCACTCTCTCTTTTTCCCTATCTTCTCTATTTTTCTTTTTTTT
TACTTCTTTCCCTCTCTTTTTCCATCTTCCCTCCCCTTTCTATCTCCTTT
TTTCTTCTCTTTCTTCTTCTTTTTTTCTTCTTCCTTCCCCCCCACTTTAT
TCCCCTTTCCCTTTTTACTCTTTTCTTATCCCCCTTTTTTTACCCCTTTT
TCTTTCCTATCTCCCCCTTTTTTTTATTTTTTCCCCCCCCTCCTTTTCTT
TTTTTTATAAATTTTCTCCTCTTTATTTCTAATCCCCTCCTTTTTTTTAT
CCCCTATCCATTCTATTTCTCCTCTTTTTCTTCCTTCTCCCCTTTTTTTT
TCTTTTCTTTTTTCCTTTTCCACTATCTCTTTTTTTTT
GATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGACCTGCTCTGGAAGACAGACAGGCGGAG
GAGCAGCTCAGGTTGGGGGATCTCTCACAGGACTGTTCCCAGGAAGCCAG
TCCCAAGGTCACCTCTCTGGCCCCCTGAGCAAGGCCCCTGCTTCTCCTCA
CAACCCTGGAGCCTCCCTCTCCACCACGTCCACCCTTAGCCCATCTCAAG
TGTCTCCCTCCTTTATTTAGAAAGGAATTGTTTCCGGAAGGGAGCTCTCC
CGACCATGGCCTCTGTTCTTCCACACAGCACCCGCTAGGCACAAGCTCAA
GGGCAGGAACTACGTGCCGTTCTCAGACTGCTGTCTGCCTGGCTGTCTAC
TCATGCCTACTCTAGATGAAGCGCTTGTCCTGTTCGCTATAGGAGAAGGG
GTCCCCAGGGAAAGGCTGGAGTGGGGGCTGGTTGTAGACACCCTGCAGGA
AGATCCAGGCTGTGCCCACCACCATGACGGGTGTCACCACAAACAGGCAG
AGACGGTCCACTGTGCGGGCCACCTGTTTCCAGTTGTCCCTTCTCCTATA
AGCAGGGTCAAGAAACCATGGTTTTAATGCAAGTCATTCACAAAGCAGGT
TTCCTCCCCTTTAAGCTAGGGCCCTGTAAAATGGATAAACTTTAGGTCTT
CTATTCCTTCTGTTGTCTGTGGTGCGGCCACCTTTCAGCGTTTAATAACC
CCCACTGCTGGTGCGTCTCGTACTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_n05.g1 MSMg01no402_n05.g1 CHROMAT_FILE:
MSMg01no402_n05.g1 PHD_FILE: MSMg01no402_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:52 2005
         (245 letters)



>mm_chr1_89095234_89095878
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacctgctctggaagacagacaggcggaggagcagctcaggttgggggatctctcacag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacctgctctggaagacagtcaggcggaggagcagctcaggttgggggatctctcacag 386

                                                                       
Query: 61  gactgttcccaggaagccagtcccaaggtcacctctctggccccctgagcaaggcccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactgttcccaggaagccagtcccaaggtcacctctctggccccctgagcaaggcccctg 326

                                                                       
Query: 121 cttctcctcacaaccctggagcctccctctccaccacgtccacccttagcccatctcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttctcctcacaaccctggagcctccctctccaccacgtccacccttagcccatctcaag 266

                                                                       
Query: 181 tgtctccctcctttatttagaaaggaattgtttccggaagggagctctcccgaccatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtctccctcctttatttagaaaggaattgtttccggaagggagctctcccgaccatggc 206

                
Query: 241 ctctg 245
           |||||
Sbjct: 205 ctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)