BAC Information

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BAC

Clone NameMSMg01-402P01
Chromosome1 (Build37)
Map Location 173,303,383 - 173,459,347
singlet/doubletdoublet
Overlap genePvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P01.T7 (MSMg01no402_p01.b1)MSMg01-402P01.TJ (MSMg01no402_p01.g1)
ACCAG501969AG501970
length813761
length of high quality
(start - end)
169 (75 - 243)337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no402_p01.b1 PHD_FILE: MSMg01no402_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:02 2005CHROMAT_FILE: MSMg01no402_p01.g1 PHD_FILE: MSMg01no402_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,303,383 - 173,303,551)(173,459,025 - 173,459,347)
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAGGATCCGC
GGAATTCTGTCTTTTGCCTGAAAGGATCAACTTTCTGTGGAGATTAATTT
CCTAGAAAGGGAGGGGCCCCATCCCTGCTTTTCTACTCCTGATGACAGAG
GTGGGCAGGCCCTTTCCTGTAGGACCTACCCAAACCCAGAGAAGCCAGAA
AGGGAGGTTTGCCTCCCCGCCCAAGTGTGGAGAACGAGGAGAATCCCAGG
TAAGCCGCTGGCCCCAGTGACCCTGTTTCCATCCTAGTATTTTGTTGTGA
TGGGGTCATGGCGAAAGATTTTTTTTACAGAGATGGTCGTGAGTAGTTTA
GGGTCTACAGCTTCTTCGTCTACATCTCTGTTTCAGGACACAGGGGTTCT
TTTATTAAAGTGACTGTTTGCCAACCATGGAGGTCGTCTAGTTTTGTAAT
ATTACACTGCTTGCTATCATTTAGCCCCCTTTCTTTCACCCGCAGTTTAC
TCATTATCCTTTTTTTCTTTCTCGCTTTTTGTCCTCGTGTTTATTCTGCA
AGTCCCTATTTTTTTTTATTAATTCACACTTCTAGTCCCCCCTTTATTTG
TCCACTTCTATTCTTCTTGTTTTTCTTTCTTTCTCCCCCTTTTCTCCTTT
ATTCTTCCTTCTCCCTATCCACCCGTTTTCTTCTTTTCCCCCTCCCTTTT
TTTTTTCTCTTACCTCCCTTTTGTCTTCTCCCCGTTTTTACTTTCGCTCC
TCTCGTTGTATTCTTCTTCCCTCTTCCTCTCTTTCGTCCCACACCGTCCT
GCCTTCTCTTCTG
CACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCAGGATATGTTCAGTTCAG
AGTGTTTAATAATGAGAGAGCAGCCAGTGCCTTGTGTGCTGGCATCAAGG
TCACTGGATGTAATTCTGAAGCTGTGAGTCTTTTTTAAAAATACTATTTA
TTTTATTATTTTAAATTATGTATATATCTGTATGTTTTGTGTATGTATAT
GCATGTGTGTACATGTACCCTTGGAATCCAGAAGAAGGTGTCAGATTCCC
TGGAAATGGAGTTATATGTGCTTGTGACATGCCTGACATAGGTGCTTGGT
AACAGAACTGAGATCCTCTGTAAAAGCAGAAAGTGGTCTGAATTGTTGAG
CCATTTCTCATGAGTCCTATTAGTGACCAAAGGTGTCTGCGAGCAATACT
GAGTTTTTCAGTGTGTGTTGAGCACGGCAGATTGTCATAGTATTGTGAGC
ATGTATGCGAGAATGTGATCTTTCCTCATTTTTTCTTGTTCTCATGCATC
AGAACTTGATGTGTCCGGCCAGCCGTTTCATATGTTTGGGTTCCAGTCTG
GAAGGTCCTCCTTGCAATCCTGTCAACAGAACAACGTATCTTAGGTCTGG
CTAACATAAACATTTTACCTAAAATTCTCCTTTCCTGAAAACACAGTTCC
ACTTCTTCCAATCTCCCAATTCTTCACTTTATGACTCCCCTAGCCATTGT
CTCCTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p01.b1 MSMg01no402_p01.b1 CHROMAT_FILE:
MSMg01no402_p01.b1 PHD_FILE: MSMg01no402_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:02 2005
         (169 letters)



>mm_chr1_173303183_173303751
          Length = 569

 Score =  327 bits (169), Expect = 2e-94
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcaactttctgtggagattaatttcctagaaagggaggggccccatccctgcttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcaactttctgtggagattaatttcctagaaagggaggggccccatccctgcttttct 260

                                                                       
Query: 61  actcctgatgacagaggtgggcaggccctttcctgtaggacctacccaaacccagagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcctgatgacagaggtgggcaggccctttcctgtaggacctacccaaacccagagaag 320

                                                            
Query: 121 ccagaaagggaggtttgcctccccgcccaagtgtggagaacgaggagaa 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaaagggaggtttgcctccccgcccaagtgtggagaacgaggagaa 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no402_p01.g1 MSMg01no402_p01.g1 CHROMAT_FILE:
MSMg01no402_p01.g1 PHD_FILE: MSMg01no402_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:02 2005
         (337 letters)



>mm_chr1_173459025_173459760
          Length = 736

 Score =  482 bits (249), Expect = e-140
 Identities = 306/325 (94%), Gaps = 4/325 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcaggatatgttcagttcagagtgtttaataatgagagagcagccagtgccttgtgt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 actgcaggatatgttcagttcagagtgtttaataatgagagagcggccagtgccttgtgt 264

                                                                       
Query: 61  gctggcatcaaggtcactggatgtaattctgaagc-tgtgagtcttttttaaaaatacta 119
           |||||| | | |||||||||||||||| ||||| | |||||||| |||| ||||||||||
Sbjct: 263 gctggcgtgagggtcactggatgtaatactgaa-catgtgagtc-ttttaaaaaatacta 206

                                                                       
Query: 120 tttattttattattttaaattatgtatatatctgtatg-ttttgtgtatgtatatgcatg 178
           |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 205 tttattttattattttaaattatgtatatacctgtgtgtttttgtgtatgtatatgcatg 146

                                                                       
Query: 179 tgtgtacatgtacccttggaatccagaagaaggtgtcagattccctggaaatggagttat 238
           ||||| || |||||||||||||||  |||||||||| |||||||||||||||||||||||
Sbjct: 145 tgtgtgcaagtacccttggaatccccaagaaggtgttagattccctggaaatggagttat 86

                                                                       
Query: 239 atgtgcttgtgacatgcctgacataggtgcttggtaacagaactgagatcctctgtaaaa 298
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 85  atgtgcttgtgacatgcctgacataggtgcttgggaacagaactgagatcctctgcaaaa 26

                                    
Query: 299 gcagaaagtggtctgaattgttgag 323
           |||||||||||||||||||||||||
Sbjct: 25  gcagaaagtggtctgaattgttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 736
Length adjustment: 9
Effective length of query: 328
Effective length of database: 727
Effective search space:   238456
Effective search space used:   238456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)