Query= MSMg01no403_b05.b1 MSMg01no403_b05.b1 CHROMAT_FILE:
MSMg01no403_b05.b1 PHD_FILE: MSMg01no403_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:13 2005
(458 letters)
>mm_chr1_82503660_82504519
Length = 860
Score = 762 bits (394), Expect = 0.0
Identities = 440/456 (96%), Gaps = 2/456 (0%)
Strand = Plus / Minus
Query: 5 caatcaataatctcttcatgcattgggtttctttgattattcagggtcatgctgtaatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caatcaataatctcttcatgcattgggtttctttgattattcagggtcatgctgtaatta 601
Query: 65 atttatccatatatttaatgcaatttatttaatgttgtttcctcagtaattgat--aaaa 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 600 atttatccatatatttaatgcaatttatttaatgttgtttcctcagtaattgataaaaaa 541
Query: 123 aaaaaaaaggatccttaattattcaccagaactgtatgttagctttggcagtttaaagca 182
||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 540 aaaaaaaaggatcctcaattattcaccagaactgtatgttagctttggttgcttaaagca 481
Query: 183 taatatatgtgattctgtttatttagaaagtgtgtgcctcccccacatagaccatgtgac 242
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct: 480 taatatatgtgattctgttcacttagaaagtgtgtgcctaccccacatagaccatgtgac 421
Query: 243 agatgtatccaccccatggccaaagcttcatttcagccttcctggaacatgttatcaccc 302
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 420 agatgtatccaccccatgcccaaagcttcatttcagccttcctggaacatgtcatcaccc 361
Query: 303 cacataccatccacctctctaccccgccacatggtgtgatccagcctcttgtcacaccat 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cacatatcatccacctctctaccccgccacatggtgtgatccagcctcttgtcacaccat 301
Query: 363 ctcctctcatgtagaccgtgccacagaccccaccgccaccccccagccacgtgccctact 422
|||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 300 ctcctctcatatagaccatgccacagaccccacccccacaccccagccacgtgccctact 241
Query: 423 ctagaccctatttcatcccatacagaccatgctgca 458
||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctagaccctatttcatcccatacagaccatgctgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 860
Length adjustment: 10
Effective length of query: 448
Effective length of database: 850
Effective search space: 380800
Effective search space used: 380800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_b05.g1 MSMg01no403_b05.g1 CHROMAT_FILE:
MSMg01no403_b05.g1 PHD_FILE: MSMg01no403_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:13 2005
(474 letters)
>mm_chr1_82295505_82296378
Length = 874
Score = 826 bits (427), Expect = 0.0
Identities = 468/495 (94%), Gaps = 21/495 (4%)
Strand = Plus / Plus
Query: 1 catccaataacaggcaggaggacactgagtagtcataagtggccagctgaaaatatgcaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 catccaataacaggtaggaggacactgagtagtcataagtggccagctgaaaatatgcaa 239
Query: 61 tatttggagtttgcaatttataatttggtacaattcatgcaaagcttcacaattttaaga 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 240 tatttggagtttgcaatttataatttggtacaatttatgcaaagcttcacaattttaaga 299
Query: 121 gcagtgggagacacaatcccacaatgaaaaagatatgagtcatatagagttagcatcctt 180
|||||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 300 gcagtgggagacacaagcccacaatgaaaaatatttgaatcatatagagttagcatcctt 359
Query: 181 gagactgacgacaataaggcatacatataagacagttcaggtatccagaactgtccagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagactgacgacaataaggcatacatataagacagttcaggtatccagaactgtccagcc 419
Query: 241 tccctttagtagtcatcctccccattctgcacacatttaaatttcccttaaaatttagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tccctttagtagtcatcctccccattctgcacacatttaaatttcccttaaaatttagtt 479
Query: 301 gtttgcaagtgcatggttgt---------------------gtaggtctgaaggatctgg 339
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 gtttgcaagtgcatggttgttctttgcaagtgcatggttgtgtaggtctgaaggatctgg 539
Query: 340 ataaatctggataaattcaagagtaaaagataaagaagaatgagtataacctgtagcttt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ataaatctggataaattcaagagtaaaagataaagaagaatgagtataacctgtagcttt 599
Query: 400 ctagaaccatggggaaactggctaagaaaacctatggatttcttacggatttatatgaaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctagaaccatggggaaactggctaagaaaacctatggatttcttacggatttatatgaaa 659
Query: 460 cagaaataactttcc 474
|||||||||||||||
Sbjct: 660 cagaaataactttcc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
