BAC Information

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BAC

Clone NameMSMg01-403F09
Chromosome1 (Build37)
Map Location 38,110,205 - 38,110,717
singlet/doubletsinglet
Overlap geneEif5b, Rev1
Upstream geneA230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434
Downstream geneEG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403F09.T7 (MSMg01no403_f09.b1)MSMg01-403F09.TJ (MSMg01no403_f09.g1)
ACCAG502270AG502271
length762740
length of high quality
(start - end)
512 (66 - 577)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no403_f09.b1 PHD_FILE: MSMg01no403_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:35 2005CHROMAT_FILE: MSMg01no403_f09.g1 PHD_FILE: MSMg01no403_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGTTGCCAAGACCTTGCTCAAAGAGTGGATCACTACTATCTCAGGT
TTGTGTGGTAGCTCTGTGATTCGAGAACAGGACCTGAGCACAATGGCTCG
AGCCCCTTGTCTAACATTACAAGCTGTAAGGCGTGCTGGGTCCTCACCTG
GGGTTTTCCTCCTCCCTAGATCCGATGGAAGAAGACATCCTGCAGGTTGT
GAGATACTGCACTGACCTCATAGAGGAGAAAGACTTGGAAAAATTGGATC
TGGTTATAAAATACATGAAAAGGTAATTTATTTAATTTTTTACTTAAAGA
GGAAAAAAAAAAGCATGTCCCAACAGTCAATTGAGGGCATATGGATAGAA
CAGGTTTTTAAGGTTCCTGGTTTTAAATGCCATATAATAATGTTGACAGG
AATACTAAGTTAAAAATAATCACTCCCATGGTTATATGTCCAATACACAA
GTGACCATGAAATGTTTCTGAGTGCCCTAATAGGCCTTTTAAACCAAGTT
TATTTTCTTAACACTTGGTTTTACTGTCTGGGCTGGCCTTTAAATTCAGT
GGCCACTGTATCCAGTTCAAAAAAAAAAACCAAGAATGAACCTAAGTCCG
AATGACAACCATGCGTGCTGGAAGTTTCTCTTCAGTGATGCCCTCTTCCT
CCCCTTCAGGTTGAAGCACACACTCTTTGGAACCTCGTTGGAAACATGCC
GTTTGACTTTTT
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCTCTTCCAGCACCAAGTCTGCCTG
GATGTTGGCAGGCTCGCCACCATGACGATACTGGACTGAACCTCTGAAAT
TGTAAGCCAGCCCCAATTAAATGTTTTTGCCTTGGTCATGGTGTCTCTTC
ACAGCAGTAAAATCCTAAGATGCCCTGGGACCTAGATTGCTCCCCAGCAA
CCACGATTTTAAAAAGCTAACCATGCCAGCACTGCCTCATTAATCCCAGT
ACTGAGAAGGTTTTGTTATGTCAGTGCATGGCCTAGCTTACTTGCCAAGC
CACAAGCCCATTAGAGACCCTGTCTCAAGGAAAACTAAAGGATATTACCT
GCAGAATGGCCAATCAGGTTATCCTCTGGCCTTCATGTGTACACGTGAGC
ATATGCACCAACCGAAAGAAATCTCATACTCTTTTTTTTTTAAAGACTTA
TCTCATTATTATATCTAACTACACTGTAACTGCCTTCAGCTGCATCAGAA
CAGGGTGTCTGATCTCTTTATGTGTGCTTGTGAGCCCTCATCTTATTGCT
GGGATTCCAATTCCGTATCTTCTCAATACCATCCTTCCTTCTCTTTTGTT
CCTCCCTCTTTCTTTCCCCCCCTTTCATTTCCTTAACACCCTCCTTTCTT
CCATCTATTTTCACCCTTCGCTCTTTCTTCCTTATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_f09.b1 MSMg01no403_f09.b1 CHROMAT_FILE:
MSMg01no403_f09.b1 PHD_FILE: MSMg01no403_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:35 2005
         (512 letters)



>mm_chr1_38110005_38110917
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgctcaaagagtggatcactactatctcaggtttgtgtggtagctctgtgattcgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ccttgctcaaagagtggatcactactatctcaggtttgtgtggtagctctgtgattcgag 654

                                                                       
Query: 61  aacaggacctgagcacaatggctcgagccccttgtctaacattacaagctgtaaggcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aacaggacctgagcacaatggctcgagccccttgtctaacattacaagctgtaaggcgtg 594

                                                                       
Query: 121 ctgggtcctcacctggggttttcctcctccctagatccgatggaagaagacatcctgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctgggtcctcacctggggttttcctcctccctagatccgatggaagaagacatcctgcag 534

                                                                       
Query: 181 gttgtgagatactgcactgacctcatagaggagaaagacttggaaaaattggatctggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gttgtgagatactgcactgacctcatagaggagaaagacttggaaaaattggatctggtt 474

                                                                       
Query: 241 ataaaatacatgaaaaggtaatttatttaattttttacttaaagagg-aaaaaaaaaagc 299
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 473 ataaaatacatgaaaaggtaatttatttaattttttacttaaagaggaaaaaaaaaaagc 414

                                                                       
Query: 300 atgtcccaacagtcaattgagggcatatggatagaacaggtttttaaggttcctggtttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgtcccaacagtcaattgagggcatatggatagaacaggtttttaaggttcctggtttt 354

                                                                       
Query: 360 aaatgccatataataatgttgacaggaatactaagttaaaaataatcactcccatggtta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaatgccatataataatgttgacaggaatactaagttaaaaataatcactcccatggtta 294

                                                                       
Query: 420 tatgtccaatacacaagtgaccatgaaatgtttctgagtgccctaataggccttttaaac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tatgtccaatacacaagtgaccatgaaatgtttctgagtgccctaataggccttttaaac 234

                                            
Query: 480 caagtttattttcttaacacttggttttactgt 512
           |||||||||||||||||||||||||||||||||
Sbjct: 233 caagtttattttcttaacacttggttttactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)