BAC Information

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BAC

Clone NameMSMg01-403G11
Chromosome1 (Build37)
Map Location 44,802,579 - 44,802,850
singlet/doubletsinglet
Overlap geneGulp1
Upstream geneUxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1
Downstream geneLOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403G11.T7 (MSMg01no403_g11.b1)MSMg01-403G11.TJ (MSMg01no403_g11.g1)
ACCAG502322AG502323
length762746
length of high quality
(start - end)
321 (317 - 637)272 (321 - 592)
definitionCHROMAT_FILE: MSMg01no403_g11.b1 PHD_FILE: MSMg01no403_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:40 2005CHROMAT_FILE: MSMg01no403_g11.g1 PHD_FILE: MSMg01no403_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGGGGGCGGNAAAAGAANCACATGTCAAAGATTATGCCGCGGAANCAG
GAATTTCTCAGATCCACACCAAAGACCTACTACTCTCTCCATGCTTCCTA
ACTCAGACACCATTATTATCATTGTAAACATTCACATTTGTATTTAAATT
GACAAATCTCAACAGGATTAATTTTTGAGATCTATAGAAATACACATTCA
GTGTTTTCATTTGCATGAATGTTCTCCTGTCGTTATTTTGGCAGTTGGTC
CTCTGCCTTCGTTACTTCAAACAACCTCTGACATCTTTACTATGGCTGTT
TCAGGTTATATTTTTGAAATGAATTTTCCTCATAGGCTGTGTTTTGAACA
CTTGCTGTACAGCTTATTTGGAAGGCTACTAGGCCTTTTGGGGTAGGGTG
TGACTTTCAGAAGAAGGTGAGCAGGTCAGGCCTTTGAAGATTACAGGTAC
TTCTGATTCCTGCCTATGTTTTCTAGTTCCTAATCCAAATCATGGAAGTA
ATCCTAAACTCCTCTGCCATGTCTGAGCTCCTCTCCTATATCTTCCCTGC
CCTGATGGACTGAATCATTTGAAACCATGAGCCAAAAATAAGCCTTTCTC
CCTTTATGTTCTCCCATCCGTTCAGGAGAAAAAAAGTAGCTGATGCATTC
CATCTAAACAGGAAATATCATCTAATCAGAAAAGCATATATTATTTGGCT
ATTTTATTTGTTAAGAACTAATGTGACTTTTAATCAGAAAACAACCGACT
GAGCCTCAAGGA
TGCTGCGGGGAGGCCTGGGGGNCGCCGGTCAAAATACTTTAGGTGACACT
ATAGATTGCCACGAGGAATTCTCTACAGNCACAGACTAGTCAGCATTCAA
ATCTTTAGAAGCATTTTGCTAAAACTCAAGCAGATACCATGAGGTACAGA
GGTAGGAAAATAGCATTGTTGAAAATTTGTTACGATTTTCATCACCCTGC
ATTATGTTTATATTTTGAATTATTATCAAAAGTCAAAAAAGCCATTACAT
TTAAAATGCAAACTTTGAAAGACTTTGAAAGGGGAGTAAATATAAATAGC
ATTTTTAATTATTTTANTATAAATCTGAGTATAACAGTATAATATATGTA
CAAACGAGTCAGGAAATATGGGTTTGAGAAAAATAAGCAGAAAATCAAAA
TGAGGTAATGAGCAATTGGTACTTTCTATTTCTAGTGGAGCCACAGCGCC
ACCATCTGGTCTCATCTATATGACAGCAAAATTAAAATATGTGTAAATAT
TGATTGTATCATAGCTTCTGATAACAGATACCACATAAAAGAAATATTAA
AACAAATTTACATAAAAACCATTGTCTTCCTCATGTTCACTAGGAAAATA
TTCTCTCCTAACATATACATATCCTTTCCTGAGAAACAAATTTTTCAGTC
TAAATATTTGCTAAATGCATATTGTGAGAGATATACATTTAATATAACCT
ACTGTCCACTAAGTGTACATTAAAACTCCTTACTGTTTTCCCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_g11.g1 MSMg01no403_g11.g1 CHROMAT_FILE:
MSMg01no403_g11.g1 PHD_FILE: MSMg01no403_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:41 2005
         (272 letters)



>mm_chr1_44802379_44803050
          Length = 672

 Score =  518 bits (268), Expect = e-151
 Identities = 271/272 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatctgagtataacagtataatatatgtacaaacgagtcaggaaatatgggtttgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaatctgagtataacagtataatatatgtacaaacgagtcaggaaatatgggtttgagaa 413

                                                                       
Query: 61  aaataagcagaaaatcaaaatgaggtaatgagcaattggtactttctatttctagtggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaataagcagaaaatcaaaatgaggtaatgagcaattggtactttctatttctagtggag 353

                                                                       
Query: 121 ccacagcgccaccatctggtctcatctatatgacagcaaaattaaaatatgtgtaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccacagcgccaccatctggtctcatctatatgacagcaaaattaaaatatgtgtaaatat 293

                                                                       
Query: 181 tgattgtatcatagcttctgataacagataccacataaaagaaatattaaaacaaattta 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 292 tgattgtatcatagcttctgataacagatacaacataaaagaaatattaaaacaaattta 233

                                           
Query: 241 cataaaaaccattgtcttcctcatgttcacta 272
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cataaaaaccattgtcttcctcatgttcacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)