TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCATCCCAATGAGCAGCTAATGGGCTACTTTGAGATGTATCCTTA
TCATTAAGTTTGAGAGTGGGTAGAGACATTTCCCTGAGGTGTGCTGGAAA
GCAAGACAGCTTTGGTTGGTTTTGTATTTATTATTGTTGTTTCATTTGCA
ACTGATGAATTATTCCTAACAAATTACTGAAGACACTAAGGATTACCAGG
ATTTTCCTTTCCTATCAAATAGATCAAATGTAGAAAAGTTCATATTTTGA
AAGTTTTCTCCTTCTTTTCTGATCATTTCTTCTGCTCTATCTTGACCTTC
TCACCCTCTATTGAAGCTAAGAGAGACAAGGCTCACAAATGAGCTGAGAA
GGTTGGAAGAGAACAGTAGTGGGAACAGCCCTTCCCTGTGCATTTCCAGG
CCTCAGAGAGGAGCTCCAGGAAATAAATCAACACCACACCTTCTGTTCCT
TTGTCTCTTTATATGTAGCTGCTCAAATTAGCTTTAAGTTCCCTGAGGGT
AGGGATAAGGTCTATTTTCAAACTGTGTTGAGAATCTAGCACCTTGCTTA
ATCAATGTTAAATAGTAACAGGGCATTTTAATTGGCCTACTTTCAGAGNA
TCAGATTAAATTATTCTGCTAATTAATTGGGTGATCTCACATTTCACCTA
TATTGGCAGGGGATTATATTTCCCTCTAGGGTTTAGACACGACTGACAGG
TCC

TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGACTCCAGAAACTGAGACCTAAACA
AGCTTCTTTCTTTCAAAGAAAAGCAGTTTCAGATATTTCATTATAGTAAT
TAAAAATCAACTAATATAAAATATGCAACAACATCGTCTATGAGAAATGG
AAGTTAAAATATTTGTCAATACCTTTAAAAAAAATCTAAGCATAAATTTA
CATATAATCCAGTTGCTGGGATTTTCCCAAAGCAAACAAATATGTTTGTT
GATGTAAACATTTGCTTATTATGTGTTCATAGAAGCATTATCCATAGTAA
ACAAAGACAATCTGTCTATATAGTGGTAACAAATTATTAGATCATTATGG
ATCCGTGCAATGAAATTCTATACAGCAATAAAATCATATCAACAATAAAT
ATGTGTAAACCTAAAATCATGCCAAAAAAGAAAAAGAAAAGAAAGCAGCT
GGAAAAGATGACCTAGTGTTTGATTAGCTTATATTAAGTGTGTAGAAAAA
TGAGTAGGTAATGTATAAGGGAGATTGATTAATCAATCCCCCAGACAGGA
GGATGAAAGGGGATCAACTGGAAATGAGTATCACAAAAGTTTACTGAGCA
CTGTATATGTTCTTTTTTCTACAGCGAGTGCACGGCCGTAAAATACCATC
ACTCTACTAACATATACCAGACATTCCTATTTTATTTCCAATTCCCCAGC
C

Query= MSMg01no403_i08.b1 MSMg01no403_i08.b1 CHROMAT_FILE:
MSMg01no403_i08.b1 PHD_FILE: MSMg01no403_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:50 2005
         (484 letters)



>mm_chr1_160094312_160095195
          Length = 884

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagcagctaatgggctactttgagatgtatccttatcattaagtttgagagtgggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgagcagctaatgggctactttgagatgtatccttatcattaagtttgagagtgggtag 625

                                                                       
Query: 61  agacatttccctgaggtgtgctggaaagcaagacagctttggttggttttgtatttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacatttccctgaggtgtgctggaaagcaagacagctttggttggttttgtatttatta 565

                                                                       
Query: 121 ttgttgtttcatttgcaactgatgaattattcctaacaaattactgaagacactaaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgttgtttcatttgcaactgatgaattattcctaacaaattactgaagacactaaggat 505

                                                                       
Query: 181 taccaggattttcctttcctatcaaatagatcaaatgtagaaaagttcatattttgaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taccaggattttcctttcctatcaaatagatcaaatgtagaaaagttcatattttgaaag 445

                                                                       
Query: 241 ttttctccttcttttctgatcatttcttctgctctatcttgaccttctcaccctctattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 ttttctccttcttttctgatcatttcttctgctctatcttgaccttctcaccctctactg 385

                                                                       
Query: 301 aagctaagagagacaaggctcacaaatgagctgagaaggttggaagagaacagtagtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagctaagagagacaaggctcacaaatgagctgagaaggttggaagagaacagtagtggg 325

                                                                       
Query: 361 aacagcccttccctgtgcatttccaggcctcagagaggagctccaggaaataaatcaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacagcccttccctgtgcatttccaggcctcagagaggagctccaggaaataaatcaaca 265

                                                                       
Query: 421 ccacaccttctgttcctttgtctctttatatgtagctgctcaaattagctttaagttccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacaccttctgttcctttgtctctttatatgtagctgctcaaattagctttaagttccc 205

               
Query: 481 tgag 484
           ||||
Sbjct: 204 tgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_i08.g1 MSMg01no403_i08.g1 CHROMAT_FILE:
MSMg01no403_i08.g1 PHD_FILE: MSMg01no403_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:50 2005
         (259 letters)



>mm_chr1_159920591_159921249
          Length = 659

 Score =  485 bits (251), Expect = e-142
 Identities = 257/259 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatagaagcattatccatagtaaacaaagacaatctgtctatatagtggtaacaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatagaagcattatccatagtaaacaaagacaatctgtctatatagtggtaacaaatt 260

                                                                       
Query: 61  attagatcattatggatccgtgcaatgaaattctatacagcaataaaatcatatcaacaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagatcattatggatccatgcaatgaaattctatacagcaataaaatcatatcaacaa 320

                                                                       
Query: 121 taaatatgtgtaaacctaaaatcatgccaaaaaagaaaaagaaaagaaagcagctggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taaatatgtgtaaacctaaaatcatgccaaaaaagaaaaagaaaagaaagcagctagaaa 380

                                                                       
Query: 181 agatgacctagtgtttgattagcttatattaagtgtgtagaaaaatgagtaggtaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgacctagtgtttgattagcttatattaagtgtgtagaaaaatgagtaggtaatgta 440

                              
Query: 241 taagggagattgattaatc 259
           |||||||||||||||||||
Sbjct: 441 taagggagattgattaatc 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)