Query= MSMg01no403_i10.b1 MSMg01no403_i10.b1 CHROMAT_FILE:
MSMg01no403_i10.b1 PHD_FILE: MSMg01no403_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:50 2005
(291 letters)
>mm_chr1_194532990_194533680
Length = 691
Score = 435 bits (225), Expect = e-126
Identities = 272/291 (93%), Gaps = 8/291 (2%)
Strand = Plus / Minus
Query: 1 agtggtcctaatggctgagatatctctccagcttccaaacagctgttattaaggctgagt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 646 agtggtcctaatggctgagacatctctccagcttccaaacagctgttattaaggccaagt 587
Query: 61 gtgctcagaaacttgccctggaaatggaggtgatagatcttacacacaagcacgtgcata 120
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 586 gtgctcagaaacttgccctagaaatggaggtgatagaccttacacacaagcacatgcata 527
Query: 121 cgcgcatgc-atgtgcacacacgtacacgcacacacatgcacatgaaacttgtaagttgt 179
| ||||||| | ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 526 cacgcatgcga-gtgcacacacg------cacacacgtgcacatgaaacttgtaagttgt 474
Query: 180 aataaagaagatgctgcaagtgtttatctgtcctgtagcttaagacctatataagaccaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aataaagaagatgctgcaagtgtttatctgtcctgtagcttaagacctatataagaccaa 414
Query: 240 cagagttgtatctccttgggcctttccctttgtcacagccaatgacttgac 290
|||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagagttgcaggtccttgggcctttccctttgtcacagccaatgacttgac 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no403_i10.g1 MSMg01no403_i10.g1 CHROMAT_FILE:
MSMg01no403_i10.g1 PHD_FILE: MSMg01no403_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:51 2005
(237 letters)
>mm_chr1_194371183_194371824
Length = 642
Score = 400 bits (207), Expect = e-116
Identities = 231/242 (95%), Gaps = 6/242 (2%)
Strand = Plus / Plus
Query: 2 ttcttggnttgtgagtaccctatctggaatgaatagacgtctctttatgtctcccc-agg 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttcttggtttgtgagtaccctatctggaatgaatagacgtctctttatgtctcccccagg 260
Query: 61 aaaagccataaaacggagttacgtctcattgatatctttacagagcagaacgcaacagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagccataaaacggagttacgtctcattgatatctttacagagcagaacgcaacagct 320
Query: 121 gcctgctgaagaaatcaatgctcacatcagcctggaaggttgaagcttctctat-----c 175
|||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct: 321 gcctgctgaagaaatctatgctcacgtcagcctggaaggttgaagcttctctattctatc 380
Query: 176 acaaagcttctgcaagcaaatacgacataagcagcgccttgcgcttgtttctgctgggca 235
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 381 acaaagcttctgcaagcaaatacgacataagcagcgctttgtgcttgtttctgctgggca 440
Query: 236 ta 237
||
Sbjct: 441 ta 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 642
Length adjustment: 9
Effective length of query: 228
Effective length of database: 633
Effective search space: 144324
Effective search space used: 144324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
