Query= MSMg01no403_l14.b1 MSMg01no403_l14.b1 CHROMAT_FILE:
MSMg01no403_l14.b1 PHD_FILE: MSMg01no403_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:07 2005
(547 letters)
>mm_chr1_47468277_47469222
Length = 946
Score = 822 bits (425), Expect = 0.0
Identities = 455/465 (97%), Gaps = 1/465 (0%)
Strand = Plus / Minus
Query: 1 ctataatcctacacattcttaattctttgaatagtatttaattatcaggggtgtctatta 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 464 ctataatcctacacattcttaattctttgaatagtatttaattatcaagggtgtctatta 405
Query: 61 agaagaggcatgagagctgtttgttttttcaagggattggatatatactggttacagtca 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 404 agaagaggcatgagagctgtttgttttttcaagggattggatgtatactggttacagtca 345
Query: 121 caagccatactttgaagaagctcttggcagaacatatttgatagaagtattattagtaag 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caagccatactttaaagaagctcttggcagaacatatttgatagaagtattattagtaag 285
Query: 181 caagaactgatagtaggttcagtgagcttataattcttgaactaataatcaataggagtt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 284 caaaaactgatagtaggttcagtgagcttataattcttgaactaataatcaatgggagtt 225
Query: 241 gaaggacagcttggtattatataacgatttccagactagcttaggctatagagtaagacc 300
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 224 gaaggacagcttgg-actatataacgatttacagactagcttaggctatagagtaagacc 166
Query: 301 ctatctgaaatgaacaataacaaaatcagaacgatacatttgaagtgaaacacgggaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ctatctgaaatgaacaataacaaaatcagaacgatacatttgaagtgaaacacgggaatt 106
Query: 361 aataaatatatttctaagacaattgaatatagaaaaaaatcgaaagttagagacaggctc 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 aataaatatatttctaatacaattgaatatagaaaaaaatcgaaagttagagacaggctc 46
Query: 421 aaggaatgatctttttaacaagaatgataattaaaccaaacaaat 465
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 45 aaggaatgctctttttaacaagaatgataattaaaccaaacaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_l14.g1 MSMg01no403_l14.g1 CHROMAT_FILE:
MSMg01no403_l14.g1 PHD_FILE: MSMg01no403_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:07 2005
(105 letters)
>mm_chr1_47286174_47286679
Length = 506
Score = 190 bits (98), Expect = 3e-53
Identities = 104/106 (98%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 1 cttgacaaggggg-tttttcactataattttcaaaaactgcttgaacttccccagtctct 59
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cttgacaagggggctttttcactataattttaaaaaactgcttgaacttccccagtctct 260
Query: 60 ctagatatctggtacagagtgtggcaggggtgtggggtgtggggta 105
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagatatctggtacagagtgtggcaggggtgtggggtgtggggta 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 506
Length adjustment: 8
Effective length of query: 97
Effective length of database: 498
Effective search space: 48306
Effective search space used: 48306
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
