AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCAGTATACCCTGCCTGTACAAAGCTAAGGACTCAAAACTAGTCCTT
ATTTTCAAATAGAAGAGCAACACCCTTTGTACTGCCAAGACATAGAGGAC
TGCTTTTCGAAAACAAGCCTGGAATTTTACCAAAATCAGGTATAACAGAG
AACAAACTCAGTATGTGTTTTTATTATTAATAAAGAAGTAAATTTATAAA
AATAGTTTTAAGGTGTATTTAGTTGTTGGACTGTTTGCTCAGAATCTGCC
TGAGTTGTAGCATTAGTCTGTCACTCATAGTGAGTCTTATTTTCTTTGCC
CAATTTCAGGCTTATTTCTTTACCAAAGCATAAACCCAGTCAGTAAAGGG
CATAAGAAAACAAAGGGGATGGAGAAAGGAAAGGAAGAAGAGAGAAAGGA
AGAGAGAAAAGGGGGTGGGTAGATAGAAGATGACAAAAGGAAGAAAGGAA
AAGAACATTATTAGATGTTTGGACTTTTAGTTGCTGACTTAAAAAAAAAT
GTTTCTCCACAGAAGCCAGTCTGAGCATCAGTGTGGACTGGAATAGATTC
ATCTGGAACTTTCGGCTTGTATCATATAACTCATATTCAAAGAGGGGATT
GTGGCACCCTGCATAAAGGCTCTGGCTGCAGTATCTGTGAAGTTAGGGAC
TTGCTGCTCTTGGCTCGCGGTTCACTTGATGAGCAATCAGGCGTAACTG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGGGCTCTGGGTAGGATCCCAGCACT
ATGATGATGATGATGGAGCTGGTGGTGGTGGTGATGNTNNNNNNNNGNNN
NNNGGTTTTTCCCCTCCCGGTGGCCGCGCCTCTTCTGCCCCCTTTTCCCC
CCCCTTCCCCCCCTCGCCCCTTGCCCTCCCCCTCCCCCCTTTCCCCCCCC
TTTTTTTCCTCCCGCCTCCCCCCCGGTTTTCCCCCTCTGCCCCCCCCCTC
CGTCCTGTNCCCCCCCCTCCGTCCCTTTGCCCCCGCCCCCCNCCCCGCCC
CCCGNCCCCCCTTTCCCCCCCCCCTTCCCCGTCCCCTCCCCTCCCCCCTT
TCCCCCCCCCCCCTCCCCCTTCCCCTCCCCCCCCTCCCCCCCCCCCCTTT
CCCCCCTTCCCCCTCCCCTTTTCCCCCCTCTCGCTTCCCCTCCCCTCCCC
CCCTTCCCCCCTTCCCCCCCCCTTTCCCCGCCTTTTTCCCCCCCCCCCCT
CCTCCCTTTTCCTTCTTCCCCCCCTTTTTCCCCCCCTCCTCCCCTCCCTC
TTCCTCCCCCCTTCCCCCCCCCCCCCCCGCCCCCTCCTTTCCCCCCCCCC
TTTCCTCCCCCCCCCCCTCCCTCTCCCTCTTCCCCCTCCCCCTCTTCCCC
TCTCCCCCTTCCTATTCCCCCCTTTCCCCCCCCCCTTTCCCTCCCCCCCT
CTTTNTTTTTTCTCCTCCCCTTCCTTTTCCCCTCCCCCCCTCCCCTCTCC
TTTCCTTCCTTTCTCCCTTTCCCTCCTCC

Query= MSMg01no403_o02.b1 MSMg01no403_o02.b1 CHROMAT_FILE:
MSMg01no403_o02.b1 PHD_FILE: MSMg01no403_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:20 2005
         (596 letters)



>mm_chr1_77246953_77247948
          Length = 996

 Score = 1035 bits (535), Expect = 0.0
 Identities = 579/595 (97%), Gaps = 4/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccagtataccctgcctgtacaaagctaaggactcaaaactagtccttattttc 64
           ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagcacagcctgcctgtacaaagctaaggactcaaaactagtccttattttc 264

                                                                       
Query: 65  aaatagaagagcaacaccctttgtactgccaagacatagaggactgcttttcgaaaacaa 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 aaatagaagagcaacaccctttgtactgccaagacataaaggactgcttttcgaaaacaa 324

                                                                       
Query: 125 gcctggaattttaccaaaatcaggtataacagagaacaaactcagtatgtgtttttatta 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 gcctggaattttaccaaaatcaggtataacagagaacaaactcagtgtgtgtttttatta 384

                                                                       
Query: 185 ttaataaagaagtaaatttataaaaatagttttaaggtgtatttagttgttggactgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaataaagaagtaaatttataaaaatagttttaaggtgtatttagttgttggactgttt 444

                                                                       
Query: 245 gctcagaatctgcctgagttgtagcattagtctgtcactcatagtgagtcttattttctt 304
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 gctcggaatctgcctgagttgtagcattagtctgtcactcatagcgagtcttattttctt 504

                                                                       
Query: 305 tgcccaatttcaggcttatttctttaccaaagcataaacccagtcagtaaagggcataag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcccaatttcaggcttatttctttaccaaagcataaacccagtcagtaaagggcataag 564

                                                                       
Query: 365 aaaacaaaggggatggagaaaggaaaggaagaagagagaaaggaagagagaaaagggggt 424
           ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 565 aaaacaaagggaatggagagaggaa-ggaagaagagagaaaggaagagagaaaagagggt 623

                                                                       
Query: 425 gggtagatagaagatgacaaaaggaagaaaggaaaagaacattattagatgtttggactt 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 gggtagatagaagatgacaaaaggaagaaaggaaaagaaaattattagatgtttggactt 683

                                                                       
Query: 485 ttagttgctgacttaaaaaaaaa---tgtttctccacagaagccagtctgagcatcagtg 541
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 684 ttagttgctgacttaaaaaaaaaaattgtttctccacagaagccagtctgagcatcagtg 743

                                                                  
Query: 542 tggactggaatagattcatctggaactttcggcttgtatcatataactcatattc 596
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 744 tggactggaatagattcatctggaactttcggtttgtatcatataactcatattc 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)