Query= MSMg01no404_a04.b1 MSMg01no404_a04.b1 CHROMAT_FILE:
MSMg01no404_a04.b1 PHD_FILE: MSMg01no404_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:31 2005
(600 letters)
>mm_chr1_148342514_148343513
Length = 1000
Score = 1114 bits (576), Expect = 0.0
Identities = 586/590 (99%), Gaps = 3/590 (0%)
Strand = Plus / Plus
Query: 11 gaattctcattggatcatccccagcagcctaaatcagtgctgctgctctctgaagatgac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctcattggatcatccccagcagcctaaatcagtgctgctgctctctgaagatgac 270
Query: 71 tacagcctagctcactagttgtctactcctgtttacaacacatcctttcacttctctttg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tacagcctagctcactagttgtctactcctgtttacaacacatcctttcacttctctttg 330
Query: 131 gagatctgtttgtcttattcatcctgttctcttgggttacccagcttcctcactttgtgg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagatctgtttgtcttattcatcctgttctcttgggttacccagcttcctcactttgtgg 390
Query: 191 gtacttccagtttggtacatttgtttgcctgaggattatcataagaaaggttcccactgt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtacttccagtttggtacatttgtttgcctgaggattatcataagaaaggttcccactgt 450
Query: 251 taaccattctcagaaaagaaaaaaaaaaaagaaagaaagaaagcacttctttaacatttt 310
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 451 taaccattctcagaaaagaaaaaaaaaa--gaaagaaagaaagcacttctttaacatttt 508
Query: 311 tgggttcttggcccctggaataagtgactttcacctgattagatgccaccaggaactact 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgggttcttggcccctggaataagtgactttcacctgattagatgccaccaggaactact 568
Query: 371 gagtgtttccaactcctactttcctgcagctcaccactctacactgctttggaagatcat 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gagtgtttccaactcctactttcctgcagctcaccactctacactgctttggaagatcat 628
Query: 431 gggatgtctccttgaatcatggatatgtttctctcacactcatcttgcttcattaacttt 490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gggatgtctccttgaatcgtggatatgtttctctcacactcatcttgcttcattaacttt 688
Query: 491 cctctggtaagtatttctttatattgtgatgagtactttactacttgtgttaatttttac 550
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 689 cctctggtaagtatttctttatat-gtgatgagtactttactacttgtgttaatttttac 747
Query: 551 ttttaaaaaataagcactactttttctccactctctctctctctgtctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttttaaaaaataagcactactttttctccactctctctctctctgtctct 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_a04.g1 MSMg01no404_a04.g1 CHROMAT_FILE:
MSMg01no404_a04.g1 PHD_FILE: MSMg01no404_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:31 2005
(453 letters)
>mm_chr1_148491072_148491924
Length = 853
Score = 861 bits (445), Expect = 0.0
Identities = 451/453 (99%)
Strand = Plus / Minus
Query: 1 atggaaggagagatgaaaatggatctagggagggaagggaatgtgatgtatttctatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atggaaggagagatgaaaatggatctagggagggaagggaatgtgatgtatttctatttc 594
Query: 61 aattaaaaacatgtaaaagtaaacacactggccaataagctacacgcatttcctgagaca 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 593 aattaaaaacatgtaaaagtaaacgcactggccaataagctacacgcatttcctgagaca 534
Query: 121 gtggaaatgtctactcattattcatcttgttacatttacagggagaaagtaaaggcagtt 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtggaaatgtctactcagtattcatcttgttacatttacagggagaaagtaaaggcagtt 474
Query: 181 tgctataggtagttccttatccttagaaaagacatttcataattaaatttaatgtcatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgctataggtagttccttatccttagaaaagacatttcataattaaatttaatgtcatgg 414
Query: 241 cattttataaagaacacagaatgttatgggatttaggaaagaggtttaatttaagggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cattttataaagaacacagaatgttatgggatttaggaaagaggtttaatttaagggaca 354
Query: 301 cctaactatgaactatgaactataaattctttaagaaaacaatgcagaagcctaacttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctaactatgaactatgaactataaattctttaagaaaacaatgcagaagcctaacttgg 294
Query: 361 tgtgattatagtgtgattagatttcctgaactaagtgtgcctaggctgttgaccgagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgtgattatagtgtgattagatttcctgaactaagtgtgcctaggctgttgaccgagagt 234
Query: 421 aaaattattcaatatgtgtatagatgccaactt 453
|||||||||||||||||||||||||||||||||
Sbjct: 233 aaaattattcaatatgtgtatagatgccaactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
