BAC Information

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BAC

Clone NameMSMg01-404B01
Chromosome1 (Build37)
Map Location 92,616,626 - 92,617,093
singlet/doubletsinglet
Overlap genenone
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8
Downstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404B01.T7 (MSMg01no404_b01.b1)MSMg01-404B01.TJ (MSMg01no404_b01.g1)
ACCAG502827AG502828
length729707
length of high quality
(start - end)		459 (43 - 501)494 (70 - 563)
definitionCHROMAT_FILE: MSMg01no404_b01.b1 PHD_FILE: MSMg01no404_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:35 2005CHROMAT_FILE: MSMg01no404_b01.g1 PHD_FILE: MSMg01no404_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGTGTTGTTCCATACCACAGAAGGAGTTTGGAGCTATCCACAGCTCC
TCAGGTGCTGTCTCCTTTAATGTTAAAGACAGTATAAAAGTGAGTCTTCC
ATCTCCTTCACAAACCACAAAGCTGATATTTGAGGGACTAAGCAACCGCC
CTGGAGGGTACAGCCAGGAGCTCCAGGCTTTGACATGGAGCCAGCAGCCA
AAAGAGAAGATTTCTGGAAATGGACAAGCCATCCTCAATGGATTAGGCAG
ACTCCTCTAGAGGAACAGAACCAATATGTACATGTGTATATATGTGTGTA
TGTGTGTGCATACACACAAAGGAACTCATTAGAGTGATTATTTATACAAC
CATCTGCACTCTGGAGAAGCTGCGAACACTCATGCACACGCACACGCAGA
CACACATACACACACATACACACACACACACACACACACAACTTCAAGCA
CTACTGGTTTTGTCTATGCCTTTGCAACGCTGATTAAACAAATATCACCC
TGGATGGCCTTTTTCTGTTTATGGGAACCTCTTTTTTCTTGTGTGAAACA
TAATCTTCCCGTTTCGTCGCCTTGTTTAGTTTGGCTGCTCTCCCGCTCCC
CCTGGGTAACCGCAACTTGGTCCTTACCTTCCTCTTTTTCTTTTAACACA
AGGCAAAAAGTTTTTCTTAGGTTTCCCAC

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCAGTAACATTCA
AATTTACTTCTAGTAGAGACAGTGAGACTAATTAGGCATTACAATTTACT
TGAATAGAGCTAGAAAAGTTCAGGGCTAGTCTACATAGTAATTACTTAGG
ACAATAGCCCAGTCACACCCAAACACAGGAATACACAATGGCCCAGGAAA
TAGGTGGGTTGTAGTATTATTCATGAAAGGGTTAGTAGAACAGAATTCCC
CTGGTGCAGGTTTTCACTAGACCCAGAGGAATAACATAATCAGATATTTA
CTAAAGGGCCCCTGGTGGTGGGTTTAACAATAGACTAGCATTGCATCAGA
GCATTCACCTGGCTCCTGTGTTTAGCTGATCTTAATTAAGTGTTGTTACT
ATTCTCAGTTGTAAACACGGCCTGGCTCCCACCATCTTTTTATGTATACA
TTTTCTTTGTTTTGTGTTAAGACCAGTGTACCTTGACAGATGTATTCACC
TAGCTTTCTTGGTTTTCTTCTCTATTATAAGACTGGTGCTCGCTTTGAGA
AATACATTCAGATATACACCCCCTTGTGTCCGTATTTGGTTGTCTTTCCG
GGCCACTCCTTGCTCGCCGGAAACCCAAAACCCCGTTTTCCGGAAACTAG
GGACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_b01.b1 MSMg01no404_b01.b1 CHROMAT_FILE:
MSMg01no404_b01.b1 PHD_FILE: MSMg01no404_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:35 2005
         (459 letters)



>mm_chr1_92616422_92617281
          Length = 860

 Score =  801 bits (414), Expect = 0.0
 Identities = 449/468 (95%), Gaps = 13/468 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtgttgttccataccacagaaggagtttggagctatccacagctcctcaggt 64
           |||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtgttgctacatatcacaaaaggagtttggagctatccacagctcctcaggt 264

                                                                       
Query: 65  gctgtctcctttaatgttaaagacagtataaaagtgagtcttccatctccttcacaaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgtctcctttaatgttaaagacagtataaaagtgagtcttccatctccttcacaaacc 324

                                                                       
Query: 125 acaaagctgatatttgagggactaagcaaccgccctggagggtacagccaggagctccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaagctgatatttgagggactaagcaaccgccctggagggtacagccaggagctccag 384

                                                                       
Query: 185 gctttgacatggagccagcagccaaaagagaagatttctggaaatggac-aagccatcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gctttgacatggagccagcagccaaaagagaagatttctggaaatggaccaagccatcct 444

                                                                       
Query: 244 caatggattaggcagactcctctagaggaacagaaccaatatgtacatgtgtatatatgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatggattaggcagactcctctagaggaacagaaccaatatgtacatgtgtatatatgt 504

                                                                       
Query: 304 gtgtatgtgtgtgcatacacacaaaggaactcattagagtgattatttatacaaccatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgtatgtgtgtgcatacacacaaaggaactcattagagtgattatttatacaaccatct 564

                                                                       
Query: 364 gcactctggagaagctg------------cgaacactcatgcacacgcacacgcagacac 411
           |||||||||||||||||            |||||||||||||||||||||||||||||||
Sbjct: 565 gcactctggagaagctgtgaacacccacgcgaacactcatgcacacgcacacgcagacac 624

                                                           
Query: 412 acatacacacacatacacacacacacacacacacacaacttcaagcac 459
           ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 acacacacacacacacacacacacacacacacacacaacttcaagcac 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space:   381650
Effective search space used:   381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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