BAC Information

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BAC

Clone NameMSMg01-404C06
Chromosome1 (Build37)
Map Location 155,886,506 - 156,036,253
singlet/doubletdoublet
Overlap genenone
Upstream geneNmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C06.T7 (MSMg01no404_c06.b1)MSMg01-404C06.TJ (MSMg01no404_c06.g1)
ACCAG502884AG502885
length740762
length of high quality
(start - end)
467 (67 - 533)412 (69 - 480)
definitionCHROMAT_FILE: MSMg01no404_c06.b1 PHD_FILE: MSMg01no404_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:41 2005CHROMAT_FILE: MSMg01no404_c06.g1 PHD_FILE: MSMg01no404_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,886,506 - 155,886,972)(156,035,842 - 156,036,253)
sequence
TTTTGCGTGCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCA
CCCTGAATACCACAGACATCCCTGGTGAACTCTTTAGCCAAACGTTTTCT
TAGACCAAGCTACACTACATTACTTATTTTGTAAGTCCATCAAAAATGTA
AATCCACATTCGATGGGACTTGCTTTTCTGATCCCTAGTGGGTGTCTAGC
ATTTGCAAATGTTTTATAGTGTTCCCCTGACTGGCTCGGCCTTAAGCAGT
CAGCCTAACCTTTCTTTGCCTCTTCCCTCAGCAAACACAAAGAAAACAAT
AATCTCTGTTGTCTTTATAGTTTTAAAGTTCAGGCTTTTTCTAAGAGTAC
TATCCTAGTAATATTTTGTATCCATCTTTTAATATCCGAGTAGCTCCTAA
GGGCTCATATGATGGCTCAGTGGGAAAAGGTACTTTCTGCCAAGCCAGAA
GACCTCAGTTTAATTCCCAGGACCCACAGGGTAGAAATAGAGTCTTGACT
CATGAAAATCGTACTTTGCTGGAACACACACACACACACACACTCACTCT
CAGACACTTACACGTACACACATGTGCATGCTTGATAAATAGGGAATAAA
AGTAAAAGAAAGAAAAATGTTGTTTAACAATGGTGCTTTAAAGCCACAAT
AACTTCGATTTAAGCTTTTGGTTTTTTTAACGTGTGCTTTGTACTTTGAA
TAACATTTCCTTGTAAGTCTTTATGGTTCATTGGTTTTGG
ATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATCCTGGAGGCACCTCTCTGAGCTGAGGCAA
GCCCTGAAGAGAGCCGACAGGCAGAGGGTGTCTGCTGACCACATTCCGTG
CCCAGATCCACTCAGCAAGAAGTACTCTTGGGTGGAAGATCCCGGCAGGC
AGCATAGCCTGCCTGTGAACATGACCTCTGTATCCAGGAGTGACACCTAA
GCTCTCACCTCAACCCCAAGGAGAGGGCCATTGCCATGGCTAAGAGGCTT
GTCCTGTCCCTCTTAGTGCTGCTTCTCTAGCCACGCCCTCATCGCCCTTC
CCCCACCCCATTTACTCTGCAAGGCCTCTGCCCTCCACTAACTGAACCAG
CCACAGAAATGAGCTCCATATGGCAGCTGCCAGAAGATTCTTTTACAGAT
CCCTGCCCAGGCTACCAGCCTCCACCAACTGGGTGCCCCTCCCTTCTGAA
AACCTTTCCCTTCCTTGACCTCCATTTACAAAACTACACTTCACTTTATT
TCTCTGCCACTTAGCTCTATATTGGCTGTGTTTCCCTGGAAATTGTTCCT
AAGCTCCTCCTCCTTCTTTTCCCTTCTTACACTCCGCATTCATCCCTCCC
TCTCCTCCCTTTCTGGTTTTTCCTCCTCCCCCCTGATACCACTTTCTTTT
ACCCAATTTCTCCCCCTACCCTCTCTTTCAACCTGTGTTCCAATATTTTA
ATCTCCTCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c06.b1 MSMg01no404_c06.b1 CHROMAT_FILE:
MSMg01no404_c06.b1 PHD_FILE: MSMg01no404_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:41 2005
         (467 letters)



>mm_chr1_155886306_155887172
          Length = 867

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccctggtgaactctttagccaaacgttttcttagaccaagctacactacattactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccctggtgaactctttagccaaacgttttcttagaccaagctacactacattactta 260

                                                                       
Query: 61  ttttgtaagtccatcaaaaatgtaaatccacattcgatgggacttgcttttctgatccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgtaagtccatcaaaaatgtaaatccacattcgatgggacttgcttttctgatccct 320

                                                                       
Query: 121 agtgggtgtctagcatttgcaaatgttttatagtgttcccctgactggctcggccttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgggtgtctagcatttgcaaatgttttatagtgttcccctgactggctcggccttaag 380

                                                                       
Query: 181 cagtcagcctaacctttctttgcctcttccctcagcaaacacaaagaaaacaataatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcagcctaacctttctttgcctcttccctcagcaaacacaaagaaaacaataatctc 440

                                                                       
Query: 241 tgttgtctttatagttttaaagttcaggctttttctaagagtactatcctagtaatattt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgtctttacagttttaaagttcaggctttttctaagagtactatcctagtaatattt 500

                                                                       
Query: 301 tgtatccatcttttaatatccgagtagctcctaagggctcatatgatggctcagtgggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatccatcttttaatatccgagtagctcctaagggctcatatgatggctcagtgggaa 560

                                                                       
Query: 361 aaggtactttctgccaagccagaagacctcagtttaattcccaggacccacagggtagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtactttctgccaagccagaagacctcagtttaattcccaggacccacagggtagaa 620

                                                          
Query: 421 atagagtcttgactcatgaaaatcgtactttgctggaacacacacac 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagagtcttgactcatgaaaatcgtactttgctggaacacacacac 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no404_c06.g1 MSMg01no404_c06.g1 CHROMAT_FILE:
MSMg01no404_c06.g1 PHD_FILE: MSMg01no404_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:42 2005
         (412 letters)



>mm_chr1_156035642_156036453
          Length = 812

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcctggaggcacctctctgagctgaggcaagccctgaagagagccgacaggcagaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tatcctggaggcacctctctgagctgaggcaagccctgaagagagccgacaggcagaggg 553

                                                                       
Query: 61  tgtctgctgaccacattccgtgcccagatccactcagcaagaagtactcttgggtggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgtctgctgaccacattccgtgcccagatccactcagcaagaagtactcttgggtggaag 493

                                                                       
Query: 121 atcccggcaggcagcatagcctgcctgtgaacatgacctctgtatccaggagtgacacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atcccggcaggcagcatagcctgcctgtgaacatgacctctgtatccaggagtgacacct 433

                                                                       
Query: 181 aagctctcacctcaaccccaaggagagggccattgccatggctaagaggcttgtcctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagctctcacctcaaccccaaggagagggccattgccatggctaagaggcttgtcctgtc 373

                                                                       
Query: 241 cctcttagtgctgcttctctagccacgccctcatcgcccttcccccaccccatttactct 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctcttagcgctgcttctctagccacgccctcatcgcccttcccccaccccatttactct 313

                                                                       
Query: 301 gcaaggcctctgccctccactaactgaaccagccacagaaatgagctccatatggcagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcaaggcctctgccctccactaactgaaccagccacagaaatgagctccatatggcagct 253

                                                               
Query: 361 gccagaagattcttttacagatccctgcccaggctaccagcctccaccaact 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gccagaagattcttttacagatccctgcccaggctaccagcctccaccaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)