BAC Information

Click to search

BAC

Clone NameMSMg01-404C18
Chromosome1 (Build37)
Map Location 45,992,969 - 45,993,318
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1
Downstream geneLOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C18.T7 (MSMg01no404_c18.b1)MSMg01-404C18.TJ (MSMg01no404_c18.g1)
ACCAG502907AG502908
length749744
length of high quality
(start - end)		480 (40 - 519)466 (71 - 536)
definitionCHROMAT_FILE: MSMg01no404_c18.b1 PHD_FILE: MSMg01no404_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:44 2005CHROMAT_FILE: MSMg01no404_c18.g1 PHD_FILE: MSMg01no404_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATCCCTGATTCCCATTTTTTAATAGGGTTATTTGGTTTTCTGGA
GTCTAACTTCTGGAGTTCATTGTATATATTGGATATTAGACTGCTATTAG
ATGTAAAGTTAATAAAAATCTTTTCCCAATCTGTCGGTTGCCATTTTTGT
CCTATTGACAGAGTCCTTTGCCTTACAGAAGCTTTGAAATTTTATGAGGT
CCCATTTGTTGATTCTTGATCTTTGAACATAGGACATTGGCATTCTGTTT
GGGTACTGGGTACTTTTCCCCTCTACCCAGGTATTGAAGGCTATTCCCCA
CTATCTCCTCTATAAGTTTCAGTGTATTTAGTTTTATGTGGAGATTCTTG
ATCCACTTGGACTTAAGCTTTGTACAGGGATATAAGAATGGATCTATTTG
CATTCTTCTACATGTTGACTTCCAGTTAAAACAGCACCATTTGTTGAAAA
TGCTGTCTTTTTTCCACTGGATGGGTTCAGTTCCTTTGTCCAAGATCAAG
TGACAATAAGTGTGTGGGTTCATTTCTGTGTCTTCAATTCTATTCCATTG
ATCTACCTGCCTGTTTCTGTACCAATTACATGGAATGGTTATCACTAATT
TTCCTTGTATAACGCTTTAAACCCCGCCAGAAGGTATATTCCAAAAACCT
TTTTATTGTCCAAAAAAATTTTAAAACTTGTGTTTTTTGTGCATTCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGGCCCAGTGACTGGCTTCCACATGAGGC
CCTGGGATTTTCTCTAAAGCTTTCTATTGAGATCCAAGCCTGATCCACAA
AACTTCACACTCCAAAAGCCCTGTAGTTTTTGGAGTAACCTCTCTAAGAG
CAATACAAAGCTATCCAAATTTTAGTCTTGCTGTTCATCCATTCAGTCTC
CCTCAGTCAGAAAAGACATATAAAGACAAAAGACAAAAAGCTTGCTCGAT
CCTTTTTCCTCGTTGCCATTCACTATGGACCTCTGAAGGATTGAAGGCAT
GCCCCTGGGCCTTCAATTAGTATATCCAAGTATGCAACCCCTAGGTTAGC
TCAGCCTTTGATGGGCCCCAAAGTAAAGGATTCGGTGGACAATTCATCTT
GCTGGGGTCTCCAATGTTAATCCTCAGATATGCTAGAGAAAAAAATAGTT
CCACAGCTTTGAGCCAACATTGAAGCAAGCTTTAATTCAATACTGGTGAG
GAAGGACTCAGGGCAGGTCTACCCCTTGGTTTCCGGGGAATAGCCATGAA
TCATAATTCACAGGGATTTAAAAGGTGGAAACCCTAAATCATTGGTTTTT
TTATCATGGCCAACCAGAGGCAAGAATAACCTTTTGATTTATTTTCTGGG
GGGCAAACCCTCTTACTTATTTGGACAAAAGAAATTCCCGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c18.g1 MSMg01no404_c18.g1 CHROMAT_FILE:
MSMg01no404_c18.g1 PHD_FILE: MSMg01no404_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:44 2005
         (466 letters)



>mm_chr1_45992653_45993518
          Length = 866

 Score =  677 bits (350), Expect = 0.0
 Identities = 350/350 (100%)
 Strand = Plus / Minus

                                                                       
Query: 117 aacctctctaagagcaatacaaagctatccaaattttagtcttgctgttcatccattcag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aacctctctaagagcaatacaaagctatccaaattttagtcttgctgttcatccattcag 607

                                                                       
Query: 177 tctccctcagtcagaaaagacatataaagacaaaagacaaaaagcttgctcgatcctttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctccctcagtcagaaaagacatataaagacaaaagacaaaaagcttgctcgatcctttt 547

                                                                       
Query: 237 tcctcgttgccattcactatggacctctgaaggattgaaggcatgcccctgggccttcaa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcctcgttgccattcactatggacctctgaaggattgaaggcatgcccctgggccttcaa 487

                                                                       
Query: 297 ttagtatatccaagtatgcaacccctaggttagctcagcctttgatgggccccaaagtaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttagtatatccaagtatgcaacccctaggttagctcagcctttgatgggccccaaagtaa 427

                                                                       
Query: 357 aggattcggtggacaattcatcttgctggggtctccaatgttaatcctcagatatgctag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggattcggtggacaattcatcttgctggggtctccaatgttaatcctcagatatgctag 367

                                                             
Query: 417 agaaaaaaatagttccacagctttgagccaacattgaagcaagctttaat 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agaaaaaaatagttccacagctttgagccaacattgaagcaagctttaat 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |