Query= MSMg01no404_d19.b1 MSMg01no404_d19.b1 CHROMAT_FILE:
MSMg01no404_d19.b1 PHD_FILE: MSMg01no404_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:50 2005
(457 letters)
>mm_chr1_64402024_64402880
Length = 857
Score = 876 bits (453), Expect = 0.0
Identities = 453/453 (100%)
Strand = Plus / Plus
Query: 5 gaattcacgacaatgaccatgccaggggacagcctttcacaatagatggcagagacatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgacaatgaccatgccaggggacagcctttcacaatagatggcagagacatct 264
Query: 65 atgatacagaacttgcagataaaatacagaggatcggcttctctgtgatgtttctgaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatacagaacttgcagataaaatacagaggatcggcttctctgtgatgtttctgaatt 324
Query: 125 ttggaaaccaaacgctgacactgggtaaagcatagatgtaagagaaaactaaagggcagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggaaaccaaacgctgacactgggtaaagcatagatgtaagagaaaactaaagggcagg 384
Query: 185 tgggggaggaaccctggggagaatggaacagttgagctgtccagaggggaccgagcagcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggggaggaaccctggggagaatggaacagttgagctgtccagaggggaccgagcagcc 444
Query: 245 tccaagtataactcaatagactcagcatggctatgctgattaaatgaaagggaaagaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccaagtataactcaatagactcagcatggctatgctgattaaatgaaagggaaagaaag 504
Query: 305 acagagaagacctcaacttttttatttgaccctgagtatagatgaaaaattttgagtgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagagaagacctcaacttttttatttgaccctgagtatagatgaaaaattttgagtgaa 564
Query: 365 agtatttcataattttttaactattggcccactgggctttcacttctaaagaatttttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtatttcataattttttaactattggcccactgggctttcacttctaaagaatttttta 624
Query: 425 actaaattgaataggaaaatacttatttggcat 457
|||||||||||||||||||||||||||||||||
Sbjct: 625 actaaattgaataggaaaatacttatttggcat 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_d19.g1 MSMg01no404_d19.g1 CHROMAT_FILE:
MSMg01no404_d19.g1 PHD_FILE: MSMg01no404_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:50 2005
(536 letters)
>mm_chr1_64584294_64585229
Length = 936
Score = 961 bits (497), Expect = 0.0
Identities = 522/535 (97%), Gaps = 8/535 (1%)
Strand = Plus / Minus
Query: 1 aaggccagcctgttctacatacagcacaagctccaggacagttagggaacacagagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 aaggccagcctgttctacatacagcacaagctccaggacagttagggaacacagagaagc 768
Query: 61 ccagactagaaaaaacaaacaaacaaacaaacaaacaaaccccaatgattagaacaaaat 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ccagactagaaa--------aaacaaacaaacaaacaaaccccaatgattagaacaaaat 716
Query: 121 actaaactgaaggaagacccaaaaacatcaagaaaccatgtatgtaccttgctgatagct 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 715 actaaactgaaggaagacccaaagacatcaagaaaccatgtatgtaccttgctgatagct 656
Query: 181 tgcaaatacccacaagtcacctgcctttataaacttcaattatctaccccatttttacca 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgcaaatacccgcaagtcacctgcctttataaacttcaattatctaccccatttttacca 596
Query: 241 aatgtatacaaatgctttgtgtagtcctttaactatgcagcaggtaaaagcagcatgtta 300
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aatctatacacatgctttgtgtagtcctttaactatgcagcaggtaaaagcagcatgtta 536
Query: 301 atatttataatactaagaaaagctccaaagagcagtaagagtagtcttgtaaaactgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atatttataatactaagaaaagctccaaagagcagtaagagtagtcttgtaaaactgcaa 476
Query: 361 cctgcatgaccacaacattgtcattctcaacttaagcctttaaccatacaaacaattcac 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cctgcatgaccacaacactgtcattctcaacttaagcctttaaccatacaaacaattcac 416
Query: 421 tctattgtgacagctttatttaataactaaaagaaaacagggggatgcactgtttagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctattgtgacagctttatttaataactaaaagaaaacagggggatgcactgtttagaaa 356
Query: 481 atctgtagcatgtatacttaaaacctactatagctttaagctgctttgaagagcc 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atctgtagcatgtatacttaaaacctactatagctttaagctgctttgaagagcc 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
