BAC Information

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BAC

Clone NameMSMg01-404F24
Chromosome1 (Build37)
Map Location 76,656,113 - 76,788,839
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404F24.T7 (MSMg01no404_f24.b1)MSMg01-404F24.TJ (MSMg01no404_f24.g1)
ACCAG503059AG503060
length775770
length of high quality
(start - end)		421 (53 - 473)408 (67 - 474)
definitionCHROMAT_FILE: MSMg01no404_f24.b1 PHD_FILE: MSMg01no404_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:01 2005CHROMAT_FILE: MSMg01no404_f24.g1 PHD_FILE: MSMg01no404_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,656,113 - 76,656,533)(76,788,501 - 76,788,839)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCCAG
GGGTATGTTCCCTGACCCCGGACAACATGTGGAGACATTTTGATTTTAAC
AATCGGTCAGGAAGAGGCACATTGTTGTTGGTATCTAGAGAGTGAAAGAT
ACTGTTAAGAATTCTGCAGTGTATTAGGTTTCTCTGCACCAAAGCCAACC
TGACAACAAAGGACTATCAGGGCTCAGAGGTTAATAGTGCCAACGGTAAT
CAAGTACCCCAAAACTGGGATATTATTTTTTGAGCAACAGCATCTTGGCA
TTCCTTTTCATAAAGATGTGTATTTGTGGTTATCTCCTTTCACGCATGTG
TGCTTCCACTACCAAGTAAAATACAAAGTTGACTGTCGGTTGGTTATTTT
ATGCCAAAGTTTAGTTTTAAAACTTTTTCCAACTTGCCAGTACTTTTCTA
GCCATGTTTTAACCCAGTGTTTTAAAGCTCATGGAGCTGAATGCCTCTCC
CTTCATTGCATCTTTAGACCATGAACTGATAAAGCCAAAGTAAATATTCC
AGTAGTTATTTTACCATATTGAGGGAAGAATTATAAGCTTTTTGAGTGCC
CAAGTTTTCTTGGGCAGGCCCAAGGGTGATTTCTATAAAGGTAACTTCCC
GGAATCCTGTTTATAAAAGGGCCCCTGAAAAAAAAACATAATCTCCCCTT
TTTTTTTTGGGACTTGGCCCCAATTTAAAAATTTTTTTTTTTTTTTATCT
CCCCCCTCCTTCCTCCTTTTTTAAN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTCTCATTTCTTCTTAAGATTCTAGAAACTGCC
TAAATTCATTGGCTCAAGACATCACTCCAGACTCTTGCTTCCATGATCAC
ATATCCCCATTCTGTATGGCCTTCTTATCTCCTTCTTATAAAAACCCTTG
TGATTATATTGGTTGACCTGGATAGCCCAATATCAAAAGACCCTTAACTT
AATAACATCAGCAAATCCTCTTTTGCTATATTCACTGTATTTATAGCTTA
AGGGATAAAGATGCAGCTACCCTCAGGATGGGGGGAATTCACAGGAATTA
GACTAAGTGAAAAAAAAATACTCAAAGCTTACTTACAATTCTACTTAGCA
AAATAATTTTTTATTGATGAAATAAAAAAATACTGAAGAGTTTAGCTGAG
ATATGCTAAACGGATTCCATAATTACACAAATTCAAAGGCAATGCTAGAA
AGAGACTGCAGATAGGAACATGTGCTTTCTGTAGACAGCATGCTTCCTCA
CGGAAAAGGATAAGAACCTGTGCTCACTACTCTGAGAATTCGGAAAGAAT
ATTTCTTTCCCAACACCAAAGACTTATAAGAAATTAACCCCTATAAAAAG
AGGGGGAACAAAATTGGTAAATTTTTATGAAAAATTTTATAGGAATTCCC
ACTTTGGGCCTTGCGGTAAAAAAAGGGAGGGGAATTAACTTTTCTCACTG
AGAAAAAGGGCTCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_f24.b1 MSMg01no404_f24.b1 CHROMAT_FILE:
MSMg01no404_f24.b1 PHD_FILE: MSMg01no404_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:01 2005
         (421 letters)



>mm_chr1_76655913_76656733
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatgttccctgaccccggacaacatgtggagacattttgattttaacaatcggtcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatgttccctgaccccggacaacatgtggagacattttgattttaacaatcggtcagga 260

                                                                       
Query: 61  agaggcacattgttgttggtatctagagagtgaaagatactgttaagaattctgcagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggcacattgttgttggtatctagagagtgaaagatactgttaagaattctgcagtgt 320

                                                                       
Query: 121 attaggtttctctgcaccaaagccaacctgacaacaaaggactatcagggctcagaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaggtttctctgcaccaaagccaacctgacaacaaaggactatcagggctcagaggtt 380

                                                                       
Query: 181 aatagtgccaacggtaatcaagtaccccaaaactgggatattattttttgagcaacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagtgccaacggtaatcaagtaccccaaaactgggatattattttttgagcaacagca 440

                                                                       
Query: 241 tcttggcattccttttcataaagatgtgtatttgtggttatctcctttcacgcatgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttggcattccttttcataaagatgtgtatttgtggttatctcctttcacgcatgtgtg 500

                                                                       
Query: 301 cttccactaccaagtaaaatacaaagttgactgtcggttggttattttatgccaaagttt 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttccattaccaagtaaaatacaaagttgactgtcggttggttattttatgccaaagttt 560

                                                                       
Query: 361 agttttaaaactttttccaacttgccagtacttttctagccatgttttaacccagtgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttttaaaactttttccaacttgccagtacttttctagccatgttttaacccagtgttt 620

            
Query: 421 t 421
           |
Sbjct: 621 t 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_f24.g1 MSMg01no404_f24.g1 CHROMAT_FILE:
MSMg01no404_f24.g1 PHD_FILE: MSMg01no404_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:01 2005
         (408 letters)



>mm_chr1_76788032_76788839
          Length = 808

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 70  tgcttccatgatcacatatccccattctgtatggccttcttatctccttcttataaaaac 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgcttccatgatcacatatccccattctgtatggccttcttatctccttcttataaaaac 749

                                                                       
Query: 130 ccttgtgattatattggttgacctggatagcccaatatcaaaagacccttaacttaataa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccttgtgattatattggttgacctggatagcccaatatcaaaagacccttaacttaataa 689

                                                                       
Query: 190 catcagcaaatcctcttttgctatattcactgtatttatagcttaagggataaagatgca 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 catcagcaaatcctcttttgctatattcactgtatttatagcttaagggataaagatgca 629

                                                                       
Query: 250 gctaccctcaggatggggggaattcacaggaattagactaagtgaaaaaaaaatactcaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gctaccctcaggatggggggaattcacaggaattagactaagtgaaaaaaaaatactcaa 569

                                                                       
Query: 310 agcttacttacaattctacttagcaaaataattttttattgatgaaataaaaaaatactg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 568 agcttacttacaattctacttagcaaaataattttttattgatgaaataaaaaaacactg 509

                                                  
Query: 370 aagagtttagctgagatatgctaaacggattccataatt 408
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagagtttagctgagatatgctaaacggattccataatt 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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