Query= MSMg01no404_g24.b1 MSMg01no404_g24.b1 CHROMAT_FILE:
MSMg01no404_g24.b1 PHD_FILE: MSMg01no404_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:07 2005
(499 letters)
>mm_chr1_109792929_109793827
Length = 899
Score = 735 bits (380), Expect = 0.0
Identities = 394/400 (98%), Gaps = 4/400 (1%)
Strand = Plus / Plus
Query: 1 ataaggtaatgaaattgtattattctaagctgccaagtttgggaaatatattgcagtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaggtaatgaaattgtattattctaagctgccaagtttgggaaatatattgcagtaag 260
Query: 61 agaatgaaaatgctatgtcgagttttgtagtttgtaaaaaagataaagcacactgtttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatgaaaatgctatgtcgagttttgtagtttgtaaaaaagataaagcacactgtttgc 320
Query: 121 taagcagcaaacatccggtgcatcccatcattatccagttatttatttatttgtctattt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcagcaaacatcccgtgcatcccatcattatccagttatttatttatttgtctattt 380
Query: 181 atttattttgtt-ttttaaaaaagattgtatttatttattttatacatacatgtgttcta 239
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttattttgttctttttaaaaagattgtatttatttattttatacatacatgtgttcta 440
Query: 240 tttgtatatatgcctgcatgccagaggatctcattattatagatggttgtgagccaccaa 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tttgtatatatgcctgcatgccagaggatctcattat---agatggttgtgagccaccaa 497
Query: 300 gtggttgctgagaattgaactcaggaccttgaaaagagcagaaagtactcttaaggacta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtggttgctgagaattgaactcaggaccttgaaaagagcagaaagtactcttaaggacta 557
Query: 360 agccatttctccaggcctctagttttggttttccttcctt 399
||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agccatttctccaggcctctagttttggttttccttcctt 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_g24.g1 MSMg01no404_g24.g1 CHROMAT_FILE:
MSMg01no404_g24.g1 PHD_FILE: MSMg01no404_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:07 2005
(503 letters)
>mm_chr1_109944833_109945735
Length = 903
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Minus
Query: 1 ccaagtcctagaacgaaaaattcattacattgcatagctggggatattctaaatgccgcc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 703 ccaagtcctagaacgaaaaattcattacattgcatagctggggatattttaaatgccgcc 644
Query: 61 caaagtttgggagtgctctgggaatgtaggtgtctgacacagtcatttaaccttctagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 caaagtttgggagtgctctgggaatgtaggtgtctgacacagtcatttaaccttctagca 584
Query: 121 atatttggcaaactcttgttttcggccaaaactaacttggaggaaatttagtaatgatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atatttggcaaactcttgttttcggccaaaactaacttggaggaaatttagtaatgatga 524
Query: 181 acaaagtaagggaagtagattactattctcaataatttgagaaaataaatcaattagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 acaaagtaagggaagtagattactattctcaataatttgagaaaataaatcaattagtta 464
Query: 241 aaataaagtagctacacttcagaaatgtaagcatagagtattaaataactcagacataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaataaagtagctacacttcagaaatgtaagcatagagtattaaataactcagacataat 404
Query: 301 tttcatctctggaaaaatcacacagaatgagagttcataattttaccataagactcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttcatctctggaaaaatcacacagaatgagagttcataattttaccataagactcattt 344
Query: 361 acttacgaggtgatcagcattgtaattttaggtcaaattttatacatgtctccaaggaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 acttacgaggtgatcagcattgtaattttaggtcaaattttatacatgtctccaaggaac 284
Query: 421 aatattttacaaaaattatttaaactatgttgtcttagttacttctccccttgtgacaac 480
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 283 aatattttacaaaaattatttaaactatgctgtcttggttacttctccccttgtgacaac 224
Query: 481 aatatgcaaggaatgaagggatt 503
|||||||||||||||||||||||
Sbjct: 223 aatatgcaaggaatgaagggatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
