Query= MSMg01no404_h22.b1 MSMg01no404_h22.b1 CHROMAT_FILE:
MSMg01no404_h22.b1 PHD_FILE: MSMg01no404_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:11 2005
(369 letters)
>mm_chr1_117970802_117971570
Length = 769
Score = 663 bits (343), Expect = 0.0
Identities = 362/369 (98%), Gaps = 2/369 (0%)
Strand = Plus / Plus
Query: 1 gacagtttagttggtaatgaaattgcaatgcaagtataagagaccatgttggttacctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagtttagttggtaatgaaattgcaatgcaagtataagagaccatgttggttacctag 260
Query: 61 aacccaagtggagtgaaaaactggactaaaataagctgagtgtgatggtacacagtatgg 120
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 261 aacacaagtggagtgaaaaactggactaaaatatgctgagtgtgatggtacatagtatgg 320
Query: 121 gggacagagagaggaaggtccctgggccatgctaggctactggtcaaatagatgatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggacagagagaggaaggtccctgggccatgctaggctactggtcaaatagatgatttct 380
Query: 181 actaaacaacagttcaggttgtcctctggcatccaattgtttttatgtacatacattcat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaaacaacagttcaggttgtcctctggcatccaattgtttttatgtacatacattcat 440
Query: 241 taccatacacagatcacatgtgcatgcacatacatacacacatacatatacacacaccca 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccatacacacatcacatgtgcatgcacatacatacacacatacatatacacacaccca 500
Query: 301 cagagagagagagagagagagagagagagagagagagagagagagagagagaga--gaag 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 cagagagagagagagagagagagagagagagagagagagagagagagagagagaaggaag 560
Query: 359 gaaggaagg 367
|||||||||
Sbjct: 561 gaaggaagg 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_h22.g1 MSMg01no404_h22.g1 CHROMAT_FILE:
MSMg01no404_h22.g1 PHD_FILE: MSMg01no404_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:11 2005
(454 letters)
>mm_chr1_118149962_118150815
Length = 854
Score = 824 bits (426), Expect = 0.0
Identities = 447/454 (98%)
Strand = Plus / Minus
Query: 1 ctgtttccagtagaacccttatgagctgggccaccatgaaattcattctctttctgagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctgtttccagtagaacccttatgagctgggccaccatgaaattcattctctttctgagcc 595
Query: 61 cttatgttgaatcatgttgatgattaggataatgaggaagacatgaagaagaaggcaacc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 594 cttatgttgaatcatgttgatgattaggatcatgaggaagacatgaagaagaaggcaacc 535
Query: 121 ctgggcccattcatacagtcaacaccgagatcaaattacaaatgaatcgtagacttggat 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctggacccattcatacagtcaacaccgagatcaaattacaaatgaatcgtagacttggat 475
Query: 181 atttaaaagtgaaatgcataaatgttcagtaggaaaagaagacttggtaatttgtttgtt 240
||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 474 atttaaaagtggaatgcataaatgttcggtagggaaagaagacttggtagtttgtttgtt 415
Query: 241 tttggttttttatataaagttgaagaagcaaagatattaacagtgattcaaattcataaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttgtttttttatataaagttgaagaagcaaagatattaacagtgattcaaattcataaa 355
Query: 301 cagtaaaataaaatggctacccaagcttttaataaatgaatgaaaaagaaaatagaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagtaaaataaaatggctacccaagcttttaataaatgaatgaaaaagaaaatagaagtt 295
Query: 361 aatgataaaatggaaaacaaacattaatatcacaaaatattaatatacagtcttaaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aatgataaaatggaaaacaaacattaatatcacaaaatattaatatacagtcttaaatca 235
Query: 421 gatagagggcacagaagcaggaagcaatatatag 454
||||||||||||||||||||||||||||||||||
Sbjct: 234 gatagagggcacagaagcaggaagcaatatatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
