BAC Information

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BAC

Clone NameMSMg01-404I07
Chromosome1 (Build37)
Map Location 110,170,564 - 110,170,988
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404I07.T7 (MSMg01no404_i07.b1)MSMg01-404I07.TJ (MSMg01no404_i07.g1)
ACCAG503167AG503168
length750740
length of high quality
(start - end)
456 (69 - 524)427 (71 - 497)
definitionCHROMAT_FILE: MSMg01no404_i07.b1 PHD_FILE: MSMg01no404_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:13 2005CHROMAT_FILE: MSMg01no404_i07.g1 PHD_FILE: MSMg01no404_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGAATTCA
AGGCCCTCCCAAGAAAATGATAAAAACAATCTACAGCAAACCAATAGCCA
ACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAAGG
CTGTCCACTCTCACCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCA
GAGCAATTAGACAACAAAAGGAGATCAAGAGGATACAAATTGGAAAGGAA
GAAGTCAAAATATCACTTTTTGCAGATGATATGATATTATATATTAGTGA
CCCTAAAAATTCCACCTTATTAACTCCTAAGCCTGATAAACAGCGTCAAT
GAAGTAGCCGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTA
CACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCT
CAATAGTCATAAATAATATAAAATACCTTGGCATGACTCTAACTAAGGAA
GTGAAAGATCTCCTGTGATAAGAACTTCCAGTCTTTGAAGAAAGAAATTA
AAGAAGATCTCAGAAAATGGAAAGGTCTCCCCTGCTCATGGATCAGCATG
ATTCACATTGTTAAAATTGGCTATTCTTGCCAAAGGAAACTTAGATATTT
CATGCGATTCTCCATTTAAATTCCCACTCCAATTCCTCCACAATTTATAA
GGGCTTCTTGCGCGAATCCTTTGTGAACAAAAATATCTTTTTTTTTTTAT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGCATTTTGGGTCTTTGGATCTTATTTA
TTCACATAATAGTATGAATGACATAGTTAAATATCTTGAGTCATTAACAC
TTTTGTCTGAGAAAGTTCAACTCTAATCTCATTAATGGATATGCACTATG
CATTAATTAGTAGATAAATTTATATGCCACCTGTTCAAAAGCAATGGAAT
ATGTATTTATTAATTAATAATTAAATAATGATTTAACTTTAATACATTGA
ATTAATATGTACTTATTATATATACACCCATAGAAGCATAAAAGTGGTTA
AGATTTCAGACTTATGAAGTTTGAAATATATTCCATATATTTCTTAAGGA
TGGCCATGAGGTTTAAATAAGAATATTTATAAAACAGCACCTAATTTTTG
AATTACTAGAGTACAGATGTAAGGGAAAGTATAAAATCACACCTAAGATT
AAATTGGGAAAATGTGCTTTCTAGCAAAACATTAATCAATTCTAAAATAT
TTCTCCTGAAAAGGCTACCTATTTGGTCATTTCGCCACGTTTTTACTCTG
GATTGTGCCTTTAGCGCTCATGATCCCGGTATATGTATTATAATATTTCC
CTCTTCTTCCTGATTATTCTGTTTATTTACTTTATTATATTACCCTTTTT
TCCATTATATTTCCTGCCCTCTTTTCTTTAAATTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_i07.g1 MSMg01no404_i07.g1 CHROMAT_FILE:
MSMg01no404_i07.g1 PHD_FILE: MSMg01no404_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:13 2005
         (427 letters)



>mm_chr1_110170364_110171188
          Length = 825

 Score =  737 bits (381), Expect = 0.0
 Identities = 415/427 (97%), Gaps = 2/427 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcattttgggtctttggatcttatttattcacataatagtatgaatgacatagttaa 60
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgtgccttttgggtctttggatcttatttattcacataataatatgaatgacatagttaa 260

                                                                       
Query: 61  atatcttgagtcattaacacttttgtctgagaaagttcaactctaatctcattaatggat 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 atatcttgagtcattaacacatttgtctgagaaagttcaactctaatctcattattggat 320

                                                                       
Query: 121 atgcactatgcattaattagtagataaatttatatgccacctgttcaaaagcaatggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcactatgcattaattagtagataaatttatatgccacctgttcaaaagcaatggaat 380

                                                                       
Query: 181 atgtatttattaattaataattaaataatgatttaactttaatacattgaattaatatgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 atgtatttattaattaataattaaataatgatttaactttaatacattgaattattatgt 440

                                                                       
Query: 241 acttattatatatacacccatagaagcataaaagtggttaagatttcagacttatgaagt 300
           ||||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 441 acttagtacatatacacccatagaagcataaaggtggttaagatttcagacttataaagt 500

                                                                       
Query: 301 ttgaaatatattccatatatttcttaaggatggccatgaggtttaaataagaatatttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaaatatattccatatatttcttaaggatggccatgaggtttaaataagaatatttat 560

                                                                       
Query: 361 aaaacagcacctaatttttgaattactagagtacagatgtaagggaaagtataaaatcac 420
           |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaacagcacctaatttttga--tagtagagtacagatgtaagggaaagtataaaatcac 618

                  
Query: 421 acctaag 427
           |||||||
Sbjct: 619 acctaag 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 825
Length adjustment: 9
Effective length of query: 418
Effective length of database: 816
Effective search space:   341088
Effective search space used:   341088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)