BAC Information

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BAC

Clone NameMSMg01-404J07
Chromosome1 (Build37)
Map Location 96,677,694 - 96,678,062
singlet/doubletsinglet
Overlap genenone
Upstream geneAtg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404J07.T7 (MSMg01no404_j07.b1)MSMg01-404J07.TJ (MSMg01no404_j07.g1)
ACCAG503215AG503216
length749763
length of high quality
(start - end)
369 (70 - 438)348 (69 - 416)
definitionCHROMAT_FILE: MSMg01no404_j07.b1 PHD_FILE: MSMg01no404_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:18 2005CHROMAT_FILE: MSMg01no404_j07.g1 PHD_FILE: MSMg01no404_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGCATTTTCCCACAGATTTGCATTTTAGTATGACTTTGGGATCATCTC
AATGGCTTGGTGTATTCATTAATGAAAGAGGAATGGAAATAATTGCTGAA
CTGTAGGACTCTTATAAGGATTAGCAAGTTCAGGCATTTAATATCGTGTA
GTGCATGATGAAAGGCTTTAAGATGAGTCTACAGTATTACTCAGGACAGC
CACTTTAGCTAATCTCACATTTAGGTTCATAAGTGGCACTGCAAAGGAAA
GGCTCACTTTGTGAATTTCTGCTAAAATGGGAGGGAAATTAGTTATCTTC
AACATTAGGCTGACAAAATTTTTAAGTATCGTATAACTGTCTAGTCAATG
AAGAAATGGTCTTTCACATTTCCCAAATGTGTTTTATGACGCTACCGATA
GAAAGCATCCTGTGATGATCTATTTTCAAAATCATAAGCACTCTGAATCT
TAAGAAAAGGAAAAAGTACCTAGTAGGATGAAATTAAATTACGCATACAA
TTTTATTATGCCCGACCCATTTTTACACTGTGAACATGATGTTGCTTTTT
CTGTCCATGATAATTACACTTGTTTTTTCATTTCTGGCCCCTTTATTGCC
TTTTATTTTTTCACGCCATACTTCCTACGCATATTTCCTTAACTTCTTTT
TCTTTTGTTTCCTAACACTCTCCCCTGTCTATATTTTTTCTCTCCCACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAATAATGACAC
ATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGTCCCTCAACAGAGGAATGGATACTGAAAATGTGGTAC
ATCTACACAATGCAGTACTACTCAGCTATTATAAAGAATGAATTTATGTA
CCCCCTAGTCTAGTGGATGGACCTGGTATGGCATCTTCCCTGATTTGATG
TTATACCATTCTCCAATGTTATTCCACATAATATTGTACCCCCTCCGTTT
TATGGATAATTACCCCCCTTAAACTAATATTTCCCCTTCTACTTTTATTA
TTCTTATTTTTTCTTTTTCCTCTTTGTATTCCCCCACCTAAACATTTGTG
ATCTAATGGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_j07.b1 MSMg01no404_j07.b1 CHROMAT_FILE:
MSMg01no404_j07.b1 PHD_FILE: MSMg01no404_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:18 2005
         (369 letters)



>mm_chr1_96677494_96678262
          Length = 769

 Score =  667 bits (345), Expect = 0.0
 Identities = 363/369 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcattttagtatgactttgggatcatctcaatggcttggtgtattcattaatgaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcattttagtatgactttgggatcatctcaatggcttggtgtattcattaatgaaaga 260

                                                                       
Query: 61  ggaatggaaataattgctgaactgtaggactcttataaggattagcaagttcaggcattt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 261 ggaatggaaataattgctgaactgtaggactcttataaggattaccaagttcaggtattt 320

                                                                       
Query: 121 aatatcgtgtagtgcatgatgaaaggctttaagatgagtctacagtattactcaggacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatcgtgtagtgcatgatgaaaggctttaagatgagtctacagtattactcaggacag 380

                                                                       
Query: 181 ccactttagctaatctcacatttaggttcataagtggcactgcaaaggaaaggctcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ccactttagctaatctcacatttaggttcataagtggcactgcaaaggagaggctcactt 440

                                                                       
Query: 241 tgtgaatttctgctaaaatgggagggaaattagttatcttcaacattaggctgacaaaat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgaatttctgcaaaaatgggagggaaattagttatcttcaacattaggctgacaaaat 500

                                                                       
Query: 301 ttttaagtatcgtataactgtctagtcaatgaagaaatggtctttcacatttcccaaatg 360
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttttaagtatcatataactgtctagtcaatgaagaaatggtctttctcatttcccaaatg 560

                    
Query: 361 tgttttatg 369
           |||||||||
Sbjct: 561 tgttttatg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)