BAC Information

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BAC

Clone NameMSMg01-404K19
Chromosome1 (Build37)
Map Location 94,582,910 - 94,777,812
singlet/doubletdoublet
Overlap geneGpc1, Ankmy1
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneDusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K19.T7 (MSMg01no404_k19.b1)MSMg01-404K19.TJ (MSMg01no404_k19.g1)
ACCAG503286AG503287
length755748
length of high quality
(start - end)		249 (65 - 313)445 (68 - 512)
definitionCHROMAT_FILE: MSMg01no404_k19.b1 PHD_FILE: MSMg01no404_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:26 2005CHROMAT_FILE: MSMg01no404_k19.g1 PHD_FILE: MSMg01no404_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,777,564 - 94,777,812)(94,582,910 - 94,583,352)
sequence
TTTTGCGGCGCTAAACGACTACTATATTCAGAGAATCCGCGGAATTCTCA
GTGACTCCAAGAATTCTGAGGCCTGTGTGTGGAGGGTTGTGGGAAGATAG
TCCACATCTGTAGTCTGCAAGTAGGCACTCTGGGGAGAGGGACACACAGG
ACCTGACTCAAGCCTTGTGTTTCCCACAGGCTGATCTCCTGCCCTCAAGC
CTGAAGCTCAACAATGAGCCGGGCCCACCCAAGAACTACTACTCCACACA
CACATTCATCCCAGAGGAGGGAGGGCGCACAGCTCTGCATGTGGCCTGTG
AGAGAGAGGACAACTTTATTTGTGAGCAGCCATGGGGCCCTGACCTGGGT
TGGCTGGTTTGTCACAGAGAGGAGTGTGACAGTTGGGGGGAAGGGACAGG
CTGAGTCCTGAGCCTAAGGGACTGTAGGCCAGGCAAGAGCTGCATTCAAA
CGTGATGTTTGTGTGTGTGTGTGTGTGTGTGTGTTTACCTGTTATCTGGC
ATTCCTGCTTCTATGAACTACAATGACCGCAACATGGATATTCCTATTAT
TCTCTTCTTTGTCCTCTCGATTTTTTCTCTCTTTATATTCTTCATTTCCC
CTTTACATTTCCCCAACTTTTTTTCACTCTTTTTTTTATCTAATTCTATT
TCAACTTTTTTCTTTTTTTCTCCTAACCTATTCCCTCATTTTCTTATAAA
CCCATTCTTTTCCCTTTTTTTTATTTCACCTATCCCATTATTTTTTTTCT
TTTTT

TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCTCACCTGTGCCATGTGTAACACAGCTTGT
GTGGGAAAGCCCAGAAGTTACAAAGGAGAGAGATGCAGCTGCTATAGCAA
TGGCCCACAAAGGGCCATGAGCCTCGGGTTCCTGTGTTTTCATCCTCATT
CCTTCCTGGCCCTCTAGTTAGCACACTCACTCTCAAGCACGCTATAACAG
GAATCTCTCTGGCGGGGGCCTCCATATTAACAGTTGTAAAAACTAACAAA
CCAACAAAAAACAGAGACTTATTCCCCTCTGGTGTCTCTTTGCTTTTCTC
TTCTTCCTCTTCTTTTGCCCACCATATTCAACCTTTGTCTAGCTGGTTCT
GTGTGCCTTGAAGCCTTGTAGGACTCTGACTAGATGTATATTCCCACCTC
AGTGGTCTACCTTCTCCTGGACTGCTGCCAGCTGTCAGCCTTGCAACACA
CACCTTGTCACCTTCTGTCTATCTATCTGCTTTGGGACAGAGCTTGTGAC
ACAGCAGGAGCTCAATGGCTAGGTGAATTTGGGACATGGGGGCTCAAAAA
GCACTTTTCTACAATGTGAATGCCAGAACCCATACAAAAGGGATGGGAAG
TCGGTTTAACTTGTCTATAGCGGGAGAAAAAAGGCCTAAAGAAGGGGAGT
TATTTTCCTTCAAAAGGTGTCATCCCCACTTTGCCACTTCGACGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k19.b1 MSMg01no404_k19.b1 CHROMAT_FILE:
MSMg01no404_k19.b1 PHD_FILE: MSMg01no404_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:26 2005
         (249 letters)



>mm_chr1_94777364_94778012
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaggcctgtgtgtggagggttgtgggaagatagtccacatctgtagtctgcaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctgaggcctgtgtgtggagggttgtgggaagatagtccacatctgtagtctgcaagtag 390

                                                                       
Query: 61  gcactctggggagagggacacacaggacctgactcaagccttgtgtttcccacaggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcactctggggagagggacacacaggacctgactcaagccttgtgtttcccacaggctga 330

                                                                       
Query: 121 tctcctgccctcaagcctgaagctcaacaatgagccgggcccacccaagaactactactc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 329 tctcctgccctcaagcctgaagctcaacaatgagccgggcccacccaagagcttctactc 270

                                                                       
Query: 181 cacacacacattcatcccagaggagggagggcgcacagctctgcatgtggcctgtgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cacacacacattcatcccagaggagggagggcgcacagctctgcatgtggcctgtgagag 210

                    
Query: 241 agaggacaa 249
           |||||||||
Sbjct: 209 agaggacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no404_k19.g1 MSMg01no404_k19.g1 CHROMAT_FILE:
MSMg01no404_k19.g1 PHD_FILE: MSMg01no404_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:26 2005
         (445 letters)



>mm_chr1_94582708_94583552
          Length = 845

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cctcacctgtgccatgtgtaacacagcttgtgtgggaaagcccagaagttacaaaggaga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cctcacctgtgccatgtgtaacacagcttgtgtgggaaagcccagaagttacaaaggaga 262

                                                                       
Query: 63  gagatgcagctgctatagcaatggcccacaaagggccatgagcctcgggttcctgtgttt 122
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 gagatgcagctgctatagcaatggcccacaaagggccatgagccttgggttcctgtgttt 322

                                                                       
Query: 123 tcatcctcattccttcctggccctctagttagcacactcactctcaagcacgctataaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcatcctcattccttcctggccctctagttagcacactcactctcaagcacgctataaca 382

                                                                       
Query: 183 ggaatctctctggcgggggcctccatattaacagttgtaaaaactaacaaaccaacaaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaatctctctggcgggggcctccatattaacagttgtaaaaactaacaaaccaacaaaa 442

                                                                       
Query: 243 aacagagacttattcccctctggtgtctctttgcttttctcttcttcctcttcttttgcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacagagacttattcccctctggtgtctctttgcttttctcttcttcctcttcttttgcc 502

                                                                       
Query: 303 caccatattcaacctttgtctagctggttctgtgtgccttgaagccttgtaggactctga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caccatattcaacctttgtctagctggttctgtgtgccttgaagccttgtaggactctga 562

                                                                       
Query: 363 ctagatgtatattcccacctcagtggtctaccttctcctggactgctgccagctgtcagc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctagatgtatattcccacctcagtggtctaccttctcctggactgctgccagctgtcagc 622

                                  
Query: 423 cttgcaacacacaccttgtcacc 445
           |||||||||||||||||||||||
Sbjct: 623 cttgcaacacacaccttgtcacc 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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