Query= MSMg01no404_m07.b1 MSMg01no404_m07.b1 CHROMAT_FILE:
MSMg01no404_m07.b1 PHD_FILE: MSMg01no404_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:33 2005
(244 letters)
>mm_chr1_96663254_96663897
Length = 644
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%)
Strand = Plus / Plus
Query: 1 aattatcttgcatggattattaatttgaagtaatatatgccaccatactgtgttaaccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattatcttgcatggattattaatttgaagtaatatatgccaccatactgtgttaaccct 260
Query: 61 tatcatatatctttctctgccaaaggggaatttcttctgagctttatcagaaattgaatc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tatcatatatctttctctgccaaaggggaattttttctgagctttatcagaaattgaatc 320
Query: 121 cagtgcattcatcttcaggacgcatctcagtccctttcaattattagcatttgtacttta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cagtgcattcatcttcaggacgcatctcagtccctttcaattattagcatttgtacttga 380
Query: 181 tttcaatgtatcttccctggttgattgtaataagtcttgtaccatgtctagctctttacc 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tttcaatgtatcttccctggttgattgtaataagtcttgtaccacgtctagctctttacc 440
Query: 241 atat 244
||||
Sbjct: 441 atat 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_m07.g1 MSMg01no404_m07.g1 CHROMAT_FILE:
MSMg01no404_m07.g1 PHD_FILE: MSMg01no404_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:33 2005
(357 letters)
>mm_chr1_96841536_96842291
Length = 756
Score = 644 bits (333), Expect = 0.0
Identities = 351/359 (97%), Gaps = 5/359 (1%)
Strand = Plus / Minus
Query: 1 tgagaattggagaaattgtctttctccagttggttattcaacacaaaataaagtcttgac 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgagaattggagaaattgtcttcctccagttggttattcaacacaaaataaagtcttgac 497
Query: 61 aacattcatacagattgtatttatgaatatatatgtatctgcatactcatataacaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacattcatacagattgtatttatgaatatatatgtatctgcatactcatataacaataa 437
Query: 121 tcaatgaaaaaatagtctatagactagagagtaaggagtatatgtgagagttcaggagaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 436 tcaatgaaaaaatagtctatagactagagactaaggagtatatgtgagagttcaggagaa 377
Query: 181 gaaaggaaatagtttaaattatataattctatcacattctttaaaaaaataaaaaaaaga 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaaaggaaatagtttaaattatgtaattctatcacattctttaaaaaaataaaaaaaaga 317
Query: 241 actaatt--atttatgcatttaatgaaaaaggttttagtttctagaaaacataaagatgt 298
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 actaattaaa---atgcatttaatgaaaaaggttttagtttctagaaaacataaagatgt 260
Query: 299 ataaccctttagtgaaatgagccaaaagaaatggagtggatccaaaataacagaattaa 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ataaccctttagtgaaatgagccaaaagaaatggagtggatccaaaataacagaattaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 756
Length adjustment: 9
Effective length of query: 348
Effective length of database: 747
Effective search space: 259956
Effective search space used: 259956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
