Query= MSMg01no404_m09.b1 MSMg01no404_m09.b1 CHROMAT_FILE:
MSMg01no404_m09.b1 PHD_FILE: MSMg01no404_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:33 2005
(309 letters)
>mm_chr1_118771320_118772028
Length = 709
Score = 511 bits (264), Expect = e-149
Identities = 298/312 (95%), Gaps = 6/312 (1%)
Strand = Plus / Minus
Query: 1 atttggcaagtcatggtttggaggcagctataacaaaacaatactgaaaggaagcacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atttggcaagtcatggtttggaggcagctataacaaaacaatactgaaaggaagcacaca 645
Query: 61 gatgctatgggatgccacagtttcgggagactaagtttctgtgaaactcttttcctcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gatgctatgggatgccacagtttcgggagactaagtttctgtgaaactcttttcctcggc 585
Query: 121 tctgcttccaggtttgtaaacttgtcaagcaagtcactactggagtggatgtagccgaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 actgcttccaggtttgtaaacttgtcaagcaagtcactactggagtggatgtagccgaca 525
Query: 181 cgagta---ttcttcatttgccactgagtccttcttgccttttactatctcttacaggcc 237
|||||| | || | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 524 cgagtacactgctcc---tgccactgtgtccttcttgccttttactatctcttacaggca 468
Query: 238 ggataaacatgtacttccagaactataaataaaagcaaatatttttttataacttacctt 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 467 ggataaacatgtacttccagaactataaataaaagcaaatattttttcataacttacctt 408
Query: 298 ttctggaattta 309
||||||||||||
Sbjct: 407 ttctggaattta 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_m09.g1 MSMg01no404_m09.g1 CHROMAT_FILE:
MSMg01no404_m09.g1 PHD_FILE: MSMg01no404_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:33 2005
(417 letters)
>mm_chr1_118565972_118566788
Length = 817
Score = 762 bits (394), Expect = 0.0
Identities = 409/414 (98%)
Strand = Plus / Plus
Query: 4 gggttaacaaatacttgtattactttctgatctgagccacaatggcttgtctctatggca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gggttaacaaatacttgtattactttctgatctgagccacaatggcttgtctctatggca 263
Query: 64 taaggttggacatgaactaagcaagtctgtttgcagcttgccagctgcattcagccttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaggttggacatgaactaagcaagtctgtttgcagcttgccagctgcattcagccttta 323
Query: 124 gaaggaaaaaagggcatttctctgctttcttcctggatccatttatagactgcatttata 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 gaaggaaaaaagggcatttctctgctttcttcctggatccatttagagactgcatttata 383
Query: 184 tgagttgtgtatatgcatctctttataccatttcagatgtgtagtcattctgtgtttttc 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 384 tgagttgtgtatatgcatctctttataccatttcagatatgtagtcattctgtgtacatc 443
Query: 244 caaagtaatatcctatggttgaatgacctggtgtccagtatagaaaagaatgttttagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaagtaatatcctatggttgaatgacctggtgtccagtatagaaaagaatgttttagat 503
Query: 304 gatagaacttatcactacattttgagacaagcttgcttttcactgatgagaattagtttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatagaacttatcactacattttgagacaagcttgcttttcactgatgagaattagtttg 563
Query: 364 aacatttatctacatggtgagtatattttagtatgaggatattttttgcatgac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacatttatctacatggtgagtatattttagtatgaggatattttttgcatgac 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
