BAC Information

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BAC

Clone NameMSMg01-404O04
Chromosome1 (Build37)
Map Location 53,886,134 - 53,886,458
singlet/doubletsinglet
Overlap geneHecw2
Upstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O04.T7 (MSMg01no404_o04.b1)MSMg01-404O04.TJ (MSMg01no404_o04.g1)
ACCAG503446AG503447
length755744
length of high quality
(start - end)
436 (61 - 496)325 (65 - 389)
definitionCHROMAT_FILE: MSMg01no404_o04.b1 PHD_FILE: MSMg01no404_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:42 2005CHROMAT_FILE: MSMg01no404_o04.g1 PHD_FILE: MSMg01no404_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCCGCGGAATTCTCAGC
AGATTCATCTCAAATGCCCAAGAAGCACTCAAAGAAATGCTAAACATCCA
TAGTCATCAGGGAAATGGAAAATCGAAACAACCCTGAGATTCCACCTTAC
ACCAATCAAAATGGCTAAGATAAAAAACTCAAGGGACAGCCCATGCTGTG
GAGAAGGAGGAACACTCCTCCATTGTTGGTGGGATTTCAAACTTGTACAG
CCACTCTGGAAATCAATCTGGTGGTTTCTCAGAAAATTGGAAATAGTTCT
ACCTGAAGACACAAATTTATCACTCCTGGACATAAATCTGAAAGATGCCA
CACCATGCCCCAAGGACATGTGCTCCACTATGTTCATAGCAGCTTTATTC
ATAATAGCCAGTAACTGAAAACAACCCACATATCCTTCACCTGAAGAATG
AATACAGAAAATGTGGCTCATTTACTCAATGGAATACTATTCAGCTATTA
ATAGCAAGGATATCATGAATTTTGCAGGCTAATGGATGGATCTATAAAAT
ATCTTCTGAGTAAGGCAACACTTACCTATCAGGACATCCATTGTGTGTCC
TGACAAGTGTAAATTATCCCTAAGTATTTTTACCCATGTATCCTCCCTTA
ACATCTCAAATTGTTTAATAATGGTATAATGCACTAAGTGTAGGTTGCCT
TGAATTTCTCTTTATATATTGTAAATTTAATTCTTCTTATCGCCCACGGC
TACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTTACTAATTAAAATGCACTTTCCCTGATCTCCT
ACTTCACTTTCACGGTAACTATTATTTCCTTGTACTTGACTCCCAGAAGA
TTCTTAGAGTAGTGCAGTAATCAAAATCATTCATGTACTCACACAGTCTA
AGATTTTTTTTTTAAATCACTATATGTGAGTAAATCCAGGGCCTATTTTA
GTGGTAAATCTTACCAAATGAGATCCTTAGAAGTGACCAGATAAAGGACA
AGACACTTAGCTGTCGTGTTGGCCTGGCACGGCTAGCTGGCACTATGAGA
GAAAGCAGTTGTGCTGCTGTCTACCATCTGTTCATCCAGTAGCTGTCTGT
GGACGAGACGACGGGATAGTCATTCTTCTTTCTAATTAGGCTTGGCACAA
ACAGTCAGGGCAAATTAGAATAGGGCTGCCTCTGATGGACAGGAACCTGT
AGTGCCTCAAGCATCTCATGCTTTCATCTTTCGCTCATTAACCAAGTCTT
GTCCTTAGCCTGTACCCTGATGGTTGCTACAACCGGCCCTATTGTTGCTT
ATCCTCCACTTGTGTTCTTTCTCTATGGAAAATACGGTTCCCTGGTGAAA
TGGCAATATCCATAGTGAGAATTTCTTGGAATTTTTCCTAGCTCTGGTTT
TCTTGATGACCTATCCCTGATTCACGTTTCTCCTGAATCGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o04.g1 MSMg01no404_o04.g1 CHROMAT_FILE:
MSMg01no404_o04.g1 PHD_FILE: MSMg01no404_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:42 2005
         (325 letters)



>mm_chr1_53885934_53886658
          Length = 725

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttactaattaaaatgcactttccctgatctcctacttcactttcacggtaactatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttttactaattaaaatgcactttccctgatctcctacttcactttcacggtaactatta 466

                                                                       
Query: 61  tttccttgtacttgactcccagaagattcttagagtagtgcagtaatcaaaatcattcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttccttgtacttgactcccagaagattcttagagtagtgcagtaatcaaaatcattcat 406

                                                                       
Query: 121 gtactcacacagtctaagattttttttttaaatcactatatgtgagtaaatccagggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtactcacacagtctaagattttttttttaaatcactatatgtgagtaaatccagggcct 346

                                                                       
Query: 181 attttagtggtaaatcttaccaaatgagatccttagaagtgaccagataaaggacaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 attttagtggtaaatcttaccaaatgagatccttagaagtgaccagataaaggacaagac 286

                                                                       
Query: 241 acttagctgtcgtgttggcctggcacggctagctggcactatgagagaaagcagttgtgc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acttagctgccgtgttggcctggcacggctagctggcactatgagagaaagcagttgtgc 226

                                    
Query: 301 tgctgtctaccatctgttcatccag 325
           ||| | |||||||||||||||||||
Sbjct: 225 tgccgcctaccatctgttcatccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)