BAC Information

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BAC

Clone NameMSMg01-404P05
Chromosome1 (Build37)
Map Location 156,709,883 - 156,853,530
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P05.T7 (MSMg01no404_p05.b1)MSMg01-404P05.TJ (MSMg01no404_p05.g1)
ACCAG503496AG503497
length751733
length of high quality
(start - end)
277 (66 - 342)354 (68 - 421)
definitionCHROMAT_FILE: MSMg01no404_p05.b1 PHD_FILE: MSMg01no404_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:48 2005CHROMAT_FILE: MSMg01no404_p05.g1 PHD_FILE: MSMg01no404_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,853,254 - 156,853,530)(156,709,883 - 156,710,236)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AGCTTTTCCCGAGCAGAGATATACAGAGGAGACAGCGTGAGTCTCTCTAG
CTAATGTGACCACGGAGATGAGTGGTTAATTCTCGCAACCTCGATTTCCT
TTCCTACAAAATGGGCTAAGGCATTACTCGGAAAGTACCCGGAAAGCAAG
AGGAAGTAACTTGATCTCACCTACCCCTTATAATGGCTCTGCTTGTTCTA
AAGATCTGGTTTCATGTCAGCTTTCCCAGCGAACTACAAAGTCTGTGATA
GCAGAGACTACACATCCCACGGCCATCTTTGTATTTCTAGTGTCTGGCAC
AGGGCCTGGCACATAGTATATGCTCAATAAACATGCCAACATCTAACTGA
GAGCTATGTGAGCAGATCACGCGGCGTTCATTGCTTATGCATGATAACAG
CTGTGCAGAGATCCTTCCCTTGGGTCTACATCTGGGCTCTTGGGCTCCTT
CTGTGACTCCGGGTGAGCCATACATCTCTCCTCCTGATCCTTCTCTGATT
TTTTGCATGTTCAACCCTGTTGTATCTTGCACGCATTCCTTCAGAGATGA
GGCCTATTTCTTCATTTTCATAATGCCCGTGCTCCCCCACTTGTCCCTAT
TCTTGAGTTGCCCCTCCCCCAATTTTGGCCTGTTGTTTTTCATCCCTTGT
ACTTATCCTACTTCTTCCCTCCCCCTATTCTTTTTTTATTCTTATCCCTC
C
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCTTGAACGTGGAAAATTTGACACAGAGTTCA
ATAAGCTATAGCCGAGAAGCCGCCTGCCAATGGTGATATTTTAAATCAAG
GGTCCTCAATGAAAGATTATAGATAAAGAAGAAAACAGACCCGATCCCTG
GGATATCTAAGGCTCATAGCCTGGTTGGGAGAGAAACCCTATAAGTTATC
AATAATGTAGGATAACACCAGGAGAGGACTGGACATCATCAAAGTCAGGA
GTGGAAACCATTTCTTGAAAAGGATCACCTTGAGTCAACTGTTGATGTCA
AGGGTCTCACAATGAGAACTTGGAAGTGACAACAATTTTGCAGTAGATGG
TGATTAACACACACTCTGGTCAAAACACAGAATATGGGACAGCAGACTAC
TTGGCCCTAAATGATGTATCTGTAGCACAGTCCTCTCCCTCTGCCCCGCC
CCCCAAGGCTCAGTGATTATTATAGGATAGAGAGAGAGAGAGAGAGATAG
AGAGAGAGAGATAGAGAGAGAGTATATCATATATACCCCTCTTTATCTTC
TTTCTCTTCCCTTTTTTTTTTTTTTTTATTTTCCCTCCTTTTTTATTTTT
ATTTTCTTTCTATCTCCTCTTCTCCCCACCAACTATTTTTTAATTCTCTT
TCTAAATATCCCCCCCTAATCTTCTCTCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p05.b1 MSMg01no404_p05.b1 CHROMAT_FILE:
MSMg01no404_p05.b1 PHD_FILE: MSMg01no404_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:48 2005
         (277 letters)



>mm_chr1_156853054_156853730
          Length = 677

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatatacagaggagacagcgtgagtctctctagctaatgtgaccacggagatgagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gagatatacagaggagacagcgtgagtctctctagctaatgtgaccacggagatgagtgg 418

                                                                       
Query: 61  ttaattctcgcaacctcgatttcctttcctacaaaatgggctaaggcattactcggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttaattctcgcaacctcgatttcctttcctacaaaatgggctaaggcattactcggaaag 358

                                                                       
Query: 121 tacccggaaagcaagaggaagtaacttgatctcacctaccccttataatggctctgcttg 180
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 357 tacccggaaagtaagaggaagtaacttgatctcacctaccccttaaaatggctctgcttg 298

                                                                       
Query: 181 ttctaaagatctggtttcatgtcagctttcccagcgaactacaaagtctgtgatagcaga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 297 ttctaaagatctggtttcatgtcagctttcccagtgaactacaaagtctgtgaaagcaga 238

                                                
Query: 241 gactacacatcccacggccatctttgtatttctagtg 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gactacacatcccacggccatctttgtatttctagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no404_p05.g1 MSMg01no404_p05.g1 CHROMAT_FILE:
MSMg01no404_p05.g1 PHD_FILE: MSMg01no404_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:48 2005
         (354 letters)



>mm_chr1_156709683_156710436
          Length = 754

 Score =  661 bits (342), Expect = 0.0
 Identities = 351/354 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttgaacgtggaaaatttgacacagagttcaataagctatagccgagaagccgcctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcttgaacgtggaaaatttgacacagagttcaataagctatagccgagaagccgcctgc 260

                                                                       
Query: 61  caatggtgatattttaaatcaagggtcctcaatgaaagattatagataaagaagaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatggtgatattttaaatcaagggtcctcaatgaaagattatagataaagaagaaaaca 320

                                                                       
Query: 121 gacccgatccctgggatatctaaggctcatagcctggttgggagagaaaccctataagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacccgatccctgggatatctaaggctcatagcctggttgggagagaaaccctataagtt 380

                                                                       
Query: 181 atcaataatgtaggataacaccaggagaggactggacatcatcaaagtcaggagtggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaataatgtaggataacaccaggagaggactggacatcatcaaagtcaggagtggaaa 440

                                                                       
Query: 241 ccatttcttgaaaaggatcaccttgagtcaactgttgatgtcaagggtctcacaatgaga 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttcaggaaaaggatcaccttgagtcaactgttgatgtcaagggtctcacaatgaga 500

                                                                 
Query: 301 acttggaagtgacaacaattttgcagtagatggtgattaacacacactctggtc 354
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 acttggaagtgacaacaattttgcagtagatggtgattaacagacactctggtc 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)