BAC Information

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BAC

Clone NameMSMg01-405A16
Chromosome1 (Build37)
Map Location 105,635,773 - 105,719,943
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405A16.T7 (MSMg01no405_a16.b1)MSMg01-405A16.TJ (MSMg01no405_a16.g1)
ACCAG503566AG503567
length753750
length of high quality
(start - end)		405 (52 - 456)524 (79 - 602)
definitionCHROMAT_FILE: MSMg01no405_a16.b1 PHD_FILE: MSMg01no405_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:55 2005CHROMAT_FILE: MSMg01no405_a16.g1 PHD_FILE: MSMg01no405_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,635,773 - 105,636,171)(105,719,420 - 105,719,943)
sequence
NNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAAAAGAAATGTGGCAATACATGCTTGTAATTTCATCA
CTCAGGAGTTTCAGACAGGAAAATCCAATGTTCAAAGTCATCTCCAGCTG
ATTTCTCATGGTAGGTCATGTTATATGTGCCACTGTCCTGACATAAACAT
TTCAGATGACGAAACACAAGGAATATGATAACATATAACTGCATTGATGG
AAGAAAGGGATTTGTAACATGATTGATAGATGATTGATACATAGATAGGT
ATTTGAGCAGATAGATAAATATATAGGTATTATAGACAAATAATTGATAA
ACAAATGATAGAAACGAAGAAAAAGGTAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNN
NNNNTNNTNTTTTTTTTTTTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
NTN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGATCATTATTCCAAATCCCT
GCCTCCATAAAACAAAACCTAAACACCAAACAAAAGCATATTTCCTTAGA
GGTGTTATGCAGCTTGTTCTTCATGGGTAAGTGGGCACAGTTCCTGTAGT
TTCCTAGTACAGAAGACAACAGTCCTTAGTAACTACTTTCATGTAAGAAC
AAAAAGGTGAGAGACTACTAAGGTTGACATAATTTCTTTCAAAGTTTTAA
ATTTTATGCAAGAAAATTAGGCATTATCATCTGCAATCATTCTAGCAGCT
GGAAATAGTACTAGCTTTTTCTGTTTCCATATTTTCTTTTAATTCTATGA
TCATTGATTTTCATCCTAAGAATTCCATAGACTTATTAAATAGTATTGTC
CTTCTAATACTATTTGTTTCTAGATGTATATAAGCCTTTCTCCTGTAAGA
TAAGACACATATACTTGGTATTTTATAGATTTCTTTTTTTCTACCCTTGC
CTTCTTTCTTGAAACCAGTTTAACTCTATCTTTGATTCTCCCAAGTTCAA
CCTGACTTGTTAATGCAGCAGTCCTTGGACCAGAGGGTACATGTTTCTCC
TCCTATAGGCCAATTCAAGGCAAGTCTCACCATGAGGTAATTTGGTCAAG
GGGTTTGGTATATTTTTGGGGGCTCTTGGGGGTATGCTGGTCAAATACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_a16.b1 MSMg01no405_a16.b1 CHROMAT_FILE:
MSMg01no405_a16.b1 PHD_FILE: MSMg01no405_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:55 2005
         (405 letters)



>mm_chr1_105635570_105636374
          Length = 805

 Score =  694 bits (359), Expect = 0.0
 Identities = 389/399 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaaaagaaatgtggcaatacatgcttgtaatttcatcactcaggagtttcag 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaaaagaaatgtggcaacacatgcttgtaatttcatcactcaggagtttcag 263

                                                                       
Query: 64  acaggaaaatccaatgttcaaagtcatctccagctgatttctcatggtaggtcatgttat 123
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaggaaaatctaatgttcaaagtcatctccagctgatttctcatggtaggtcatgttat 323

                                                                       
Query: 124 atgtgccactgtcctgacataaacatttcagatgacgaaacacaaggaatatgataacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtgccactgtcctgacataaacatttcagatgacgaaacacaaggaatatgataacat 383

                                                                       
Query: 184 ataactgcattgatggaagaaagggatttgtaacatgattgatagatgattgatacatag 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 ataactgcattgatggaagaaagggatttgtagcatgattgatagatgattgatacatag 443

                                                                       
Query: 244 ataggtatttgagcagatagataaatatataggtattatagacaaataattgataaacaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 ataggtatttgagcagatagataaatatataggtattatagacaaataattgataaacga 503

                                                                       
Query: 304 atgatagaaacgaagaaaaaggtagatagatagatagatagatagatagatagatagata 363
           |||||||||| |||||||||||||| ||| ||| ||| ||||||||||||||||||||||
Sbjct: 504 atgatagaaaggaagaaaaaggtaggtaggtaggtaggtagatagatagatagatagata 563

                                                  
Query: 364 gatagatagatagatagatagatagatagatagatagat 402
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatagatagatagatagatagatagatagatagatagat 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_a16.g1 MSMg01no405_a16.g1 CHROMAT_FILE:
MSMg01no405_a16.g1 PHD_FILE: MSMg01no405_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:55 2005
         (524 letters)



>mm_chr1_105719220_105720143
          Length = 924

 Score =  998 bits (516), Expect = 0.0
 Identities = 522/524 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatcattattccaaatccctgcctccataaaacaaaacctaaacaccaaacaaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tggatcattattccaaatccctgcctccataaaacaaaacctaaacaccaaacaaaagca 665

                                                                       
Query: 61  tatttccttagaggtgttatgcagcttgttcttcatgggtaagtgggcacagttcctgta 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tatttccttagaggtgttacgcagcttgttcttcatgggtaagtgggcacagttcctgta 605

                                                                       
Query: 121 gtttcctagtacagaagacaacagtccttagtaactactttcatgtaagaacaaaaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtttcctagtacagaagacaacagtccttagtaactactttcatgtaagaacaaaaaggt 545

                                                                       
Query: 181 gagagactactaaggttgacataatttctttcaaagttttaaattttatgcaagaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagagactactaaggttgacataatttctttcaaagttttaaattttatgcaagaaaatt 485

                                                                       
Query: 241 aggcattatcatctgcaatcattctagcagctggaaatagtactagctttttctgtttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggcattatcatctgcaatcattctagcagctggaaatagtactagctttttctgtttcc 425

                                                                       
Query: 301 atattttcttttaattctatgatcattgattttcatcctaagaattccatagacttatta 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atattgtcttttaattctatgatcattgattttcatcctaagaattccatagacttatta 365

                                                                       
Query: 361 aatagtattgtccttctaatactatttgtttctagatgtatataagcctttctcctgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatagtattgtccttctaatactatttgtttctagatgtatataagcctttctcctgtaa 305

                                                                       
Query: 421 gataagacacatatacttggtattttatagatttctttttttctacccttgccttctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gataagacacatatacttggtattttatagatttctttttttctacccttgccttctttc 245

                                                       
Query: 481 ttgaaaccagtttaactctatctttgattctcccaagttcaacc 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttgaaaccagtttaactctatctttgattctcccaagttcaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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