BAC Information

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BAC

Clone NameMSMg01-405E09
Chromosome1 (Build37)
Map Location 90,128,420 - 90,128,657
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E09.T7 (MSMg01no405_e09.b1)MSMg01-405E09.TJ (MSMg01no405_e09.g1)
ACCAG503743AG503744
length767750
length of high quality
(start - end)
238 (326 - 563)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no405_e09.b1 PHD_FILE: MSMg01no405_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:12 2005CHROMAT_FILE: MSMg01no405_e09.g1 PHD_FILE: MSMg01no405_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCAATXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAAGGAGCGCGGA
ATCCAGTTCTTGCAAAAAAATCTGAACACTGTGTAGATGGAGGAGGGCTG
GGGCAGGTTTAGTAGGTAGCACACAGCTGGGAATGGATCCTGGTTGATGG
GGCTTGCTGGGGCTCTTAGTGAAGGAGAGAATTAATTCATCATTAGAAAC
GCACTGTGAGTCTAGAATCTGAGGAAATGTGGAGGGGTGCTCTCAGCTTG
TATTGGAGGTGCCAGGTTTGGAAAGAAGGATAGACCTAGACTCTGGAAGT
CTCCTATGGGATTCTCTCATTTCTGTGAGTCCTGTCTGCTGTCTTTCTCC
ATCCAAGAATAGAGAACACCGAGTCTTCTTCAAGAGTCACACATATGCCC
TTGAGCAGACATGCTCCCTGGCCAGGACCCTCCTGCCCTTTCTTTCCACA
TCAGCCTTCTCCCTGTCCTGTGGCTGTCTGTCCCTCCACTCCTCTGTAGC
GCCTCGATTCCCTGCTCCCTCTCACATCCTCCCCCTTCTCTTCTTTTCAG
TTCACCCTTTTTAAACTTGTGGCATCCCACCCTATTCCCTGCCATATTAT
TGATGGCAAAGGGTTTCCTGGTAGACACCTGAGTATTAAAGTGGTGGGCG
GGAGGGTTATTTTTTTCTACCTTTTCCCCTCTCAACCCTCTCCCTGAATC
CCTGTGGGCTCCTGGAGGTCTACAGGGTTGGAAATCCTGCCCCAACATGG
NATCTCCTGGGGTACCA
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGCGTCTCGACCTTTCGCTGACGAA
GGGCTTCTCCACATGGATTAACTTTGCATTTTCCTACTTTAAGGAGTTGG
TAGGGGTAGGCTTGTTTGCCATGATCCTATTGCTTTTGCTCTGGATGGTC
TGTAAACTTAAAGCCCAAACAAAAAGGGACAAGATGGTGATAGCCCAAGC
ACTTGCTGCGTTAGAACACGGTGCCTCCCCTGATATATGGTTATCTATAC
ATAAGCAATAGGTTGCTGTTCTTTCAGCTCTTGTACCCCACGAGGCTAGT
CTCATTGCATGGGATAGAGTGAGTGTGCTTCAGCAGCCCGAGAGAGTTTC
ACGGCTAAGCACTGCAGTAGAAAGGCTCTGCGGCATAAAATGAGCCTATT
CTAGGGAGACATGTCATCTTGTATGAAGGTTGAGTGTCCAAGTGTCCTTC
CCCCAGGAAAAAACAACACGGGAGCAGACCAAGACCCCTCCAGGTGACAA
GCCTGGGAGAAGATTTTGTGTAATGCCTCTATTTTTTCCACACTGGGGAT
TTGACCTCTATCTCCACTCTCAGTACTGGGTGGCCTGTTGCCTTTTAAAT
AAAAGAATATGTGGAGGCGCTAGCTGATAGACCACGGCCTTATATAGGGT
AGAACTAAATACATTTAATTTCTTTTCCCCTTGTCCCCCCATTCCTTGTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e09.b1 MSMg01no405_e09.b1 CHROMAT_FILE:
MSMg01no405_e09.b1 PHD_FILE: MSMg01no405_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:12 2005
         (238 letters)



>mm_chr1_90128220_90128857
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtcctgtctgctgtctttctccatccaagaatagagaacaccgagtcttcttcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtcctgtctgctgtctttctccatccaagaatagagaacaccgagtcttcttcaaga 260

                                                                       
Query: 61  gtcacacatatgcccttgagcagacatgctccctggccaggaccctcctgccctttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacacatatgcccttgagcagacatgctccctggccaggaccctcctgccctttcttt 320

                                                                       
Query: 121 ccacatcagccttctccctgtcctgtggctgtctgtccctccactcctctgtagcgcctc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 321 ccacatcagccttctccctgtcctgtggctctctgtccctccactcctctgtagctcctc 380

                                                                     
Query: 181 gattccctgctccctctcacatcctcccccttctcttcttttcagttcacccttttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattccctgctccctctcacatcctcccccttctcttcttttcagttcacccttttta 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)