BAC Information

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BAC

Clone NameMSMg01-405F05
Chromosome1 (Build37)
Map Location 150,889,907 - 151,053,662
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405F05.T7 (MSMg01no405_f05.b1)MSMg01-405F05.TJ (MSMg01no405_f05.g1)
ACCAG503783AG503784
length761751
length of high quality
(start - end)		511 (51 - 561)507 (82 - 588)
definitionCHROMAT_FILE: MSMg01no405_f05.b1 PHD_FILE: MSMg01no405_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:16 2005CHROMAT_FILE: MSMg01no405_f05.g1 PHD_FILE: MSMg01no405_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,053,156 - 151,053,662)(150,889,907 - 150,890,406)
sequence
NNTTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATTCTTACCCTCTCATGAGAAACACTACTTCTGATTAAC
TCTCATTTTATACACACTATCCGCTTCTGTTATCTCATATACACAGGACT
ATTAGTTGTGCAGTTTATCAGAAATTTGATGCATTCTGCATTTTAAGCTG
GTATCACACAGTGTTATCACTCCTGATTGGTTATCGTAGGTATAACCTAC
TGCCTCTTCTTTCAAAGGAATCTCCTAAAAGCCAACAGAAAAAGTATTAT
GTCTTTTTATCAGGCATATACATTTATTACTGAGCCACTGTAGAATCTGC
CCCCATCCCCTGTCATATCCATATTTGATTTGTAGTTTCCAGAAACTTGG
CTTAAGATTGATTGGATAGGTAAAAGCCTATTTGTGGCTAAGCTTCTGGA
CATATCTACTTGATATCTGGAAAGCAATTTTTCAAGTCAAATGGTATAAC
ATTTGTTTCATTTTTAGTTATTAAATATTGTTTACACTATAAATCAGTTA
TATTATTCCCTAGGAAATTTATTGAGAGTATAAAATAACCTATTTACCAA
TGACCTTTGGAATATAACCTGTTTATGAGTTGAGGATTCTAGATGGGGCC
TCCCAAGCTAATTGCAAAAAGTTTTTCATTATCCGCTGGTATGGAAAAAC
TGCCTCCATTGCTTTCCTTTTTATTCTCGATAAAAAAAACCCTCCTTGTA
TAATCGGCTTT

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTTAAGTCTGCTCAT
GTCACTACTTCTGCTCCACAAATAGAGTAGATATGACAAATGTCCGTCCT
TCCTGAGCCAGGAGGGCCCTTCTTCAGGCATTCACCTTTGCAGTCAGTTC
TTGGGGGCCCTGGCCTCCTGCAATATGGTACAGTGTCAACACACGTGAAT
GTGGATTGTCTAACTATTCAAGGATGTAGTGTGAGACAGGGAAATACTTG
TGTTAAACTGTCAAGACTTTTGTGTCATTTACTGCAGTGCATTCAAGGTC
AATATGGCCAAGTGCATGGAATTACTTCTTAATCTTATTTTTCTGAAATG
ATTCAGTTCAAATAAAGAACTTAATCTATTGTACTTTATTATGTCTCAGT
AATTTTCAATGAAAGAATTCAAACTTCAGAATAATCTATATCATTAATTC
TCCTTGAAATTAAACACAGAAGTAAAAGGAAATAATTGAATTTTAAGCTG
GAAGTATGTAAACAGGCTGTCATAGAACATACTTGCAATGACAGCACTTG
GGAAACGAAGGCTGGAGGAGTAAGAGTCAAATGTTTTTTCTCAGATACTT
GGGAAATTCTAGGGCAGCATGGAGTATAAAGGGTGTCTTTGTAAATCATC
CACAAACATCTTTTTAAAGAGGCAAAATTTATATGCCCTATAAATTCCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_f05.b1 MSMg01no405_f05.b1 CHROMAT_FILE:
MSMg01no405_f05.b1 PHD_FILE: MSMg01no405_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:16 2005
         (511 letters)



>mm_chr1_151052952_151053862
          Length = 911

 Score =  949 bits (491), Expect = 0.0
 Identities = 503/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattcttaccctctcatgagaaacactacttctgattaactctcattttataca 64
           |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattctactcttagtctctcatgagaaacactacttctgattaactctcattttataca 652

                                                                       
Query: 65  cactatccgcttctgttatctcatatacacaggactattagttgtgcagtttatcagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cactatccgcttctgttatctcatatacacaggactattagttgtgcagtttatcagaaa 592

                                                                       
Query: 125 tttgatgcattctgcattttaagctggtatcacacagtgttatcactcctgattggttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttgatgcattctgcattttaagctggtatcacacagtgttatcactcctgattggttat 532

                                                                       
Query: 185 cgtaggtataacctactgcctcttctttcaaaggaatctcctaaaagccaacagaaaaag 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cataggtataacctactgcctcttctttcaaaggaatctcctaaaagccaacagaaaaag 472

                                                                       
Query: 245 tattatgtctttttatcaggcatatacatttattactgagccactgtagaatctgccccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tattatgtctttttatcaggcatatacatttattactgagccactgtagaatctgccccc 412

                                                                       
Query: 305 atcccctgtcatatccatatttgatttgtagtttccagaaacttggcttaagattgattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcccctgtcatatccatatttgatttgtagtttccagaaacttggcttaagattgattg 352

                                                                       
Query: 365 gataggtaaaagcctatttgtggctaagcttctggacatatctacttgatatctggaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gataggtaaaagcctatttgtggctaagcttctggacatatctacttgatatctggaaag 292

                                                                       
Query: 425 caatttttcaagtcaaatggtataacatttgtttcatttttagttattaaatattgttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caatttttcaagtcaaatggtataacatttgtttcatttttagttattaaatattgttta 232

                                      
Query: 485 cactataaatcagttatattattccct 511
           |||||||||||||||||||||||||||
Sbjct: 231 cactataaatcagttatattattccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_f05.g1 MSMg01no405_f05.g1 CHROMAT_FILE:
MSMg01no405_f05.g1 PHD_FILE: MSMg01no405_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:17 2005
         (507 letters)



>mm_chr1_150889707_150890613
          Length = 907

 Score =  866 bits (448), Expect = 0.0
 Identities = 487/500 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagttaagtctgctcatgtcactacttctgctccacaaatagagtagatatgacaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagttaagtctgctcatgtcactacttctgctccacaaatagagtagatatgacaaat 260

                                                                       
Query: 61  gtccgtccttcctgagccaggagggcccttcttcaggcattcacctttgcagtcagttct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccatccttcctgagccaggagggcccttcttcaggcattcacctttgcagtcagttct 320

                                                                       
Query: 121 tgggggccctggcctcctgcaatatggtacagtgtcaacacacgtgaatgtggattgtct 180
           ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgggggccctggcctcaagcaatatggtacagtgtcaacacacctgaatgtggattgtct 380

                                                                       
Query: 181 aactattcaaggatgtagtgtgagacagggaaatacttgtgttaaactgtcaagactttt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aactattcaaggatgtagtgtgagacaaggaaatacttgtgttaaactgtcaagactttt 440

                                                                       
Query: 241 gtgtcatttactgcagtgcattcaaggtcaatatggccaagtgcatggaattacttctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gtgtcatttactgcagtgcattcaaggtcaatatggccaagtgcatggaattatttctta 500

                                                                       
Query: 301 atcttatttttctgaaatgattcagttcaaataaagaacttaatctattgtactttatta 360
           |||||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct: 501 atcttagttttctgaaatgatacagttcaaataaagaacttaatatattatactttatta 560

                                                                       
Query: 361 tgtctcagtaattttcaatgaaagaattcaaacttcagaataatctatatcattaattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctcagtaattttcaatgaaagaattcaaacttcagaataatctatatcattaattct 620

                                                                       
Query: 421 ccttgaaattaaacacagaagtaaaaggaaataattgaattttaagctggaagtatgtaa 480
           |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 621 ccttgaaattgaacacagaagtaaaaggaaataattgaatttaaagctagaagtatgtaa 680

                               
Query: 481 acaggctgtcatagaacata 500
           ||||||||||||||||||||
Sbjct: 681 acaggctgtcatagaacata 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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