Query= MSMg01no405_h18.b1 MSMg01no405_h18.b1 CHROMAT_FILE:
MSMg01no405_h18.b1 PHD_FILE: MSMg01no405_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:29 2005
(249 letters)
>mm_chr1_92354693_92355337
Length = 645
Score = 462 bits (239), Expect = e-135
Identities = 245/249 (98%), Gaps = 4/249 (1%)
Strand = Plus / Minus
Query: 1 tgcctcgaaattcagttctttgtgtgcaggcacattgctgtctggaggggacccacccac 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcctcgaaattcag----ttgtgtgcaggcacattgctgtctggaggggacccacccac 390
Query: 61 agccttaaacatagaggaagagggagcctcagcacccctcagcgactgctgcaaaaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agccttaaacatagaggaagagggagcctcagcacccctcagcgactgctgcaaaaagca 330
Query: 121 gctacccagtcaatgaatctaaataagcaatccaagccatgcgctattgcctattggcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gctacccagtcaatgaatctaaataagcaatccaagccatgcgctattgcctattggcaa 270
Query: 181 acagaatgaatgaacgcagagccaggacagcgaggttctggcaacaatagctcctagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acagaatgaatgaacgcagagccaggacagcgaggttctggcaacaatagctcctagtct 210
Query: 241 gcggtgtcc 249
|||||||||
Sbjct: 209 gcggtgtcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 645
Length adjustment: 9
Effective length of query: 240
Effective length of database: 636
Effective search space: 152640
Effective search space used: 152640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_h18.g1 MSMg01no405_h18.g1 CHROMAT_FILE:
MSMg01no405_h18.g1 PHD_FILE: MSMg01no405_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:29 2005
(444 letters)
>mm_chr1_92178776_92179619
Length = 844
Score = 828 bits (428), Expect = 0.0
Identities = 440/444 (99%)
Strand = Plus / Plus
Query: 1 tctgaccacagtacaataaaactagagtccaataatggacgtataaacaggaaagtgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaccacagtacaataaaactagagtccaataatggacgtataaacaggaaagtgcgg 260
Query: 61 ccactggaaaattaaaacaaagcaacacaaaacaaaacattcccgagtagatacagggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactggaaaattaaaacaaagcaacacaaaacaaaacattcccgagtagatacagggtc 320
Query: 121 agagatgcaatcgggatcacagtaataaacaatctgcgtggatttatgcaagagcttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatgcaatcgggatcacagtaataaacaatctgcgtggatttatgcaagagcttggt 380
Query: 181 cctggtgatgatgggtgtcgattacaagggccggagcaggaaatgtgggggctgtctaaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 cctggtgatgatgggtgtcgattacaagggccggagcaggaaatgtaggggctgtctaaa 440
Query: 241 acatccaagaaggggggctgagtgggaaggattccacatggccattcaaacatctttatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatccaagaaggggggctgagtgggaaggattccacatggccattcaaacatctttatg 500
Query: 301 ggtgggaagaagctcatgacatttccagtcaaaaagccagataagcgaattcatttactc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ggtgggaagaagctcatgacatttccagtcaaaaagccagataagcgaattcatctactc 560
Query: 361 aaactgtggccactgtccacctgggagtagtaaagaaacattcacgtctatttacgtgtg 420
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 561 aaactgtggccactgtccacctgggagtagtaaagaaacgttcgcgtctatttacgtgtg 620
Query: 421 gctatgcatctttcttttgctctg 444
||||||||||||||||||||||||
Sbjct: 621 gctatgcatctttcttttgctctg 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
