Query= MSMg01no405_i19.b1 MSMg01no405_i19.b1 CHROMAT_FILE:
MSMg01no405_i19.b1 PHD_FILE: MSMg01no405_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:34 2005
(488 letters)
>mm_chr1_195207584_195208471
Length = 888
Score = 851 bits (440), Expect = 0.0
Identities = 480/500 (96%), Gaps = 12/500 (2%)
Strand = Plus / Plus
Query: 1 cagaaaggttgatgtttggacacagacatacacgc----ggg--------atgcagatga 48
||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 189 cagaaaggttgatgtttggacacagacatacacacaggagggggttccatatgcagatga 248
Query: 49 cagagacactggtgtttcttctggaagccaaagacacctaagactgcaagcaaacccatc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cagagacactggtgtttcttctggaagccaaagacacctaagactgcaagcaaacccatc 308
Query: 109 caaaactaggagagaaaacagagaacacactctctctagatttcctgaaggctgcagctc 168
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 309 caaaactaggagagaaaacagagaacacgctctctctagatttcctgaaggctgcagctc 368
Query: 169 tgtgagctcctagatcccacggcagctctaacttccctccaccctgtagggtgtgaaaac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgagctcctagatcccacggcagctctaacttccctccaccctgtagggtgtgaaaac 428
Query: 229 tcaacttgggtaggtgtagcaagtatttagagtcagctggcaggtctgttacaccctgga 288
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 429 tcaacttgggtgggtgtagcaaggaaacagagtcagctggcaggtctgttacaccctgga 488
Query: 289 agggaagcatggagactcgctcctgccctctccagccagggctattgctggtggtgtgga 348
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aggaaagcatggagactcgctcctgccctctccagccagggctattgctggtggtgtgga 548
Query: 349 atcgtcttcactcctcctgtttttttgttctccatctggaaaccccctcccccatgagct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atcgtcttcactcctcctgtttttttgttctccatctggaaaccccctcccccatgagct 608
Query: 409 gtgtgcagaatgcagtgtgtcagaattcatcacggggccagctgttgctgtatgttttgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtgtgcagaatgcagtgtgtcagaattcatcacggggccagctgttgctgtatgttttgc 668
Query: 469 gaagcacaattcccactttg 488
||||||||||||||||||||
Sbjct: 669 gaagcacaattcccactttg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_i19.g1 MSMg01no405_i19.g1 CHROMAT_FILE:
MSMg01no405_i19.g1 PHD_FILE: MSMg01no405_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:34 2005
(424 letters)
>mm_chr1_195394232_195395055
Length = 824
Score = 812 bits (420), Expect = 0.0
Identities = 423/424 (99%)
Strand = Plus / Minus
Query: 1 ctcctgccttagcctctcccctgttggcatcctcacatcttgagaattctctccctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcctgccttagcctctcccctgttggcatcctcacatcttgagaattctctccctttct 565
Query: 61 ttgaggggcctggttagcactttgaagtacacagactaaaacaaagttcggggtgtaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgaggggcctggttagcactttgaagtacacagactaaaacaaagttcggggtgtaggt 505
Query: 121 aggagcaaaccctctgtaacctgcagccacgaaccataaacctgagtgtcatctgtcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggagcaaaccctctgtaacctgcagccacgaaccataaacctgagtgtcatctgtcatc 445
Query: 181 ggagactttaccctgatccagtgccttctttctacatcctaaacttgtcccagagctagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggagactttaccctgatccagtgccttctttctacatcctaaacttgtcccagagctagc 385
Query: 241 tagtgcttggtgaggttggggagagtctctgagaaaggcagctataaaagcttggcagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtgcttggtgaggttggggagagtctctgagaaaggcagctataaaagcttggcagcc 325
Query: 301 cagagagaatagaaagagaagattgcgcatgctgctgctactgctggtgagcaaatatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagagaatagaaagagaagattgcgcatgctgctgctactgctggtgagcaaatatgt 265
Query: 361 agaatgctgtatgccatgaccaccaaacatgcccttttgacttttctgtgggtttttcat 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 agaatgctgtatgccatgaccaccaaacatgcccttttgtcttttctgtgggtttttcat 205
Query: 421 gatc 424
||||
Sbjct: 204 gatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
