NNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTCCATTTGCTGTTGAGAGATACTAATGACCAATGATTG
CTAGTTCCTGATAATTTGTTGTGGGACATGGTATTATGTGTGTGATTTTC
TTTTTCTGTGAGATGATTAATTTCTTGAGTTTTCTTTGATATAGTAATCC
TCCTTGTGTTGGAGCTTTTTCTAGTATCCCCTGTAGTGCTGTATTAGTAA
AAAACATGTGGTTTAAATTTGGATTTGTAGAGGAATATCTAGGTTTCTCC
ATCTGTGGTGATTGAGAGATTTCTTTTTTGTATTAAGCTGAGTCGCTATC
TGTGGTCTCTTATGGTCTACACAACATTTGTCCAGGTTCTTTTGGCTGAT
AGCATCTCTGTGTAAAAGTCAGGTGCACTTATGGCATCGTGCATTTTTTT
CCATTACTTGTCATCTTTTCTCACTGCTTTTAATATATTTCCCTCTTGAT
CTTTACTTTTACGCTTTTTTTTATTTGTGTGTTCCTAATCTTTTTTTTTT
TTTGTTAATCACCCTTTGAATTCTTTTTTTTTTCTCTTTTCGTTTTCTCC
CTTTTCTTTTCTTTTTTTGCTCTCCCCTTTTCCCTTTTTACTTCCTCTGC
TTGTTTCAACCCTTTCTTCCTGTTCTTTTATTCTTTTTTTTATCCCCCCT
CTTTATATCTTTTTATTTCCTTCACCCGCTCTTCTTATATTCTCTCTTTC
TTTATTTTTTTATATTTTTATACTTCTTTTTCTCCCCTG

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATAGAGACATGTGCCAAGT
ATTCAAACATTGATAAGCATTGTATTTGTGCTACCTCATGTCCCAAGTGA
CAAGTCTGAGTTATCTAAGTGCTGATACTGGTAAAAAGAATAATAATGGA
CTCAATTTACCACTTACATGTTATTTCAGTGGAGTAAGGAAATTTAATTT
CTGGCTTATATCTGGCTGCACTCACTACAATCAATATCATCCTTAGGGAT
ATACAACACATTACACATTTTAAATACTTGTACTCAATCATGTGTTTTGC
TTTGTAAGTTGCTACATGAAAATAATGATGCAATCCATCATAAGTAAAAG
TCTTATTCAATAATCATTTAATGTGTGAAATTGTGGTTAACATTAAAATA
ATAAAATAAAAAGTCAAATAAAAAAGTATTGATGCATATGTTTAAAATCA
AATCAACTTAATTTTGAGCAGTAAACTTTACAAGATTTAATGGCCAGTCT
TAATTATATGATTGTTACTCAGCCAAAAATTACAAGATCCCACCAATAAA
TATAAGCCTATATCTCTGATAAATGTATGCAAAAACTATCTATTAAGCAC
TTTTAAATCTGATTGCAGAAAACATTAAAATGATTATCCACCATCATCAA
GTATCAAGTAAGCTGTATCCCAAAGATGAAGATATGGACTCCTATTTATC
ATCCC

Query= MSMg01no405_m04.g1 MSMg01no405_m04.g1 CHROMAT_FILE:
MSMg01no405_m04.g1 PHD_FILE: MSMg01no405_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:50 2005
         (464 letters)



>mm_chr1_27845900_27846764
          Length = 865

 Score =  876 bits (453), Expect = 0.0
 Identities = 462/465 (99%), Gaps = 1/465 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatagagacatgtgccaagtattcaaacattgataagcattgtatttgtgctacctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatagagacatgtgccaagtattcaaacattgataagcattgtatttgtgctacctca 260

                                                                       
Query: 61  tgtcccaagtgacaagtctgagttatctaagtgctgatactggtaaaaa-gaataataat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgtcccaagtgacaagtctgagttatctaagtgctgatactggtaaaaaagaataataat 320

                                                                       
Query: 120 ggactcaatttaccacttacatgttatttcagtggagtaaggaaatttaatttctggctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactcaatttaccacttacatgttatttcagtggagtaaggaaatttaatttctggctt 380

                                                                       
Query: 180 atatctggctgcactcactacaatcaatatcatccttagggatatacaacacattacaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatctggctgcactcactacaatcaatatcatccttagggatatacaacacattacaca 440

                                                                       
Query: 240 ttttaaatacttgtactcaatcatgtgttttgctttgtaagttgctacatgaaaataatg 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaaacacttgtactcaatcatgtgttttgctttgtaagttgctacatgaaaataatg 500

                                                                       
Query: 300 atgcaatccatcataagtaaaagtcttattcaataatcatttaatgtgtgaaattgtggt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcaatccatcataagtaaaagtcttattcaataatcatttaatgtgtgaaattgtggt 560

                                                                       
Query: 360 taacattaaaataataaaataaaaagtcaaataaaaaagtattgatgcatatgtttaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacattaaaataataaaataaaaagtcaaataaaaaagtattgatgcatatgtttaaaa 620

                                                        
Query: 420 tcaaatcaacttaattttgagcagtaaactttacaagatttaatg 464
           |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tcaaatcaacttaattttgagcagtaaactttacgagatttaatg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)