BAC Information

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BAC

Clone NameMSMg01-405N13
Chromosome1 (Build37)
Map Location 193,571,677 - 193,572,118
singlet/doubletsinglet
Overlap geneLpgat1
Upstream geneEG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7
Downstream geneNek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405N13.T7 (MSMg01no405_n13.b1)MSMg01-405N13.TJ (MSMg01no405_n13.g1)
ACCAG504181AG504182
length739765
length of high quality
(start - end)
447 (133 - 579)163 (280 - 442)
definitionCHROMAT_FILE: MSMg01no405_n13.b1 PHD_FILE: MSMg01no405_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:57 2005CHROMAT_FILE: MSMg01no405_n13.g1 PHD_FILE: MSMg01no405_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTATAATTGGGGCGCNAAACGAANCATTATTTCAAAAACAGCGCG
GANNNNAGATTTACCTAAAAAACATCTTTAGGAGATAACTTCTAAACTCT
TTCATTTTACTGTATAAGAAACTATCAGAATATCTCAAAATTATATATTT
TCATTTTGAAGGAAGAAAGCAAATTAAATTAGTTAAAAATCTCTGGGTAG
AAAATCACTGCATCAAAAATTTATCTGTACAGTCTAAGGAAAGGCAGAAA
TTATTCTGAACATGAGTTTCCAACCATCAGGACTTTACAAAGAGTCTGTA
AACGGCCAGAGGTCGACTGCTTCCNTTCATCACCTTCATTACGAGGACCT
CACAGCCGCTGTGGGCCACGTCCCTGGGTGATACAGGATGAAGAGGCCCG
AGGCCTCCGAGGCCTCCTCTTCACACTCCTGGCACTCCTCTCTTACACTC
ACTCCTTCCTGTTGCCCCAGGACACGCAAGCTTCTTAGTGTGAAGGACTT
CTTCATACAAGTTCAAGGAAAGCATCTTTCCTTTCATATCAGCAATCTTA
AAATTCCATGCTAAAGAGATTTCCAACAGGGTCAACACATACCAAGTTGT
GGTACCCACTGAATTAAGATGTTGCAATTACTCTATTAGATGCTATCATT
CATATTATTATATATTAGTGGTTATGATTAAATGCTTTTACTTACAAAAT
TTAAATTAATGCACTATCGAAGCTACCTTATAAGATGAG
CCCCTTCGATTGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAACAGCAACTACA
ACAGAATAAACTTTGTGACCTGGAGATGGTGGCATGTGTCTGTAATCCCA
ACAAAGGAGGCTGAGGTGGGAGGATCACAAGTTTCTGGTTAGTCTGAAAG
CGTGTCTCAAAAATACAATTTAACTTTGCCAAAAGTCTAACCCACTCAGT
AGCTTAGTTCAGTATCCCAGAAGCATTTGTATGAGTAAATACAAACAGGG
CACTTTGCTAAGTGATGCGGCACATGCCTTTAATCCCAGCACGGGGAGGA
AGAAGCAGAGGAATCTCCCTGATTCTGAAATCAACTGCCTTACAGTGAGA
CCTGACTCCAAAATCTCAAAAAACTGGGGTGTGTGTGTGGCGGGTATTCT
TTCCTTTTTCACCCTTTTTCCCACTTCCCTCTCTCCCCCCTTTTCTTTCC
TCTTTTTCTCTCTTTCCTTTTTTTCTCTTTTCCTTTTTTTTTTCCCTTTT
ATTTTTTCCCCTCCCTGTTTTTATTTCCTTTATTCCTCTCTTTTTTTCTC
ACCCATTTTTTTTTTTCTCCCCTCTTTTTTTTTTGTCCCCCCCCCATTTC
ATCTTCCCGTTCCTCCTTTTTCTTTCTCTCTCCTTTCTTTTTCTTTCCCT
CTTTCTTTCTCTCCCCTTTTTTTTTCCCCCCTTCTTTTTTTTCTTTACTC
TACCTCCCACCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_n13.b1 MSMg01no405_n13.b1 CHROMAT_FILE:
MSMg01no405_n13.b1 PHD_FILE: MSMg01no405_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:57 2005
         (447 letters)



>mm_chr1_193571516_193572362
          Length = 847

 Score =  729 bits (377), Expect = 0.0
 Identities = 428/456 (93%), Gaps = 23/456 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaaaattatatattttcattttgaaggaagaaagcaaattaaattagttaaaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tctcaaaattatatattttcattttgaaggaagaaagcaaattaaattagttaaaaatct 544

                                                                       
Query: 61  ctgggtagaaaatcactgcatcaaaaatttatctgtacagtctaaggaaaggcaga---- 116
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
Sbjct: 543 ctgggtagaaaatcactgcatcaaaaatttacctgtacagtctaaggaaaggcagaaaag 484

                                                                       
Query: 117 ----aattattctgaacatgagtttccaaccatcaggactttacaaagagtctgtaaac- 171
               ||  |  |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 483 aaagaa--a--ctgaacatgagtttccaaccatcaggactttacaaagagtctgtaaaca 428

                                                                       
Query: 172 ggccagaggtcgactgcttccnttcatcaccttcattacgaggacctcacagccgctgtg 231
           || ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 gg-cagaggtcgactgctccctttcatcaccttcattacgaggacctcacagctgctgtg 369

                                                                       
Query: 232 ggccacgtccctgggtgatacaggatgaagaggcccgaggcctccgaggcctcctcttca 291
           |||||||||||||||||||||||||||||       |||||||  |||||||||||||||
Sbjct: 368 ggccacgtccctgggtgatacaggatgaa-------gaggcct--gaggcctcctcttca 318

                                                                       
Query: 292 cactcctggcactcctctcttacactcactccttcctgttgccccaggacacgcaagctt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactcctggcactcctctcttacactcactccttcctgttgccccaggacacgcaagctt 258

                                                                       
Query: 352 cttagtgtgaaggacttcttcatacaagttcaaggaaagcatctttcctttcatatcagc 411
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 257 cttagtgtgaaggacttcttcatacaagttcaaggaaagcgtctttcctttcatatcagc 198

                                               
Query: 412 aatcttaaaattccatgctaaagagatttccaacag 447
           ||||||||||||||||||||||||||||||||||||
Sbjct: 197 aatcttaaaattccatgctaaagagatttccaacag 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)