CCCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTACCTCTATACCCCATTTTTCAATCGGGTTGT
TTGGTTTTATGAAGTCCAACTTATTGAGTTCTTTATATATATTGGATATT
AGTACCCATCAAATTTAGGATTGATAAAGATCTTTTCCAATCTGTTGGTT
GCTGTTTTGTCTTTGACGGTGTCCTTTGAAATTTTATGAGGGCCCATTTG
CTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGATTTT
TTTCCCCTGTGTCCATATCTCTTTTTTTTTTTCTCCTTTATAAGTTTCAG
TCCTGGTTTTATGTGGAGTTCCTTGATCCAGTTAGACTTGAGCATTGTAA
AAGGAGATAAGAATGGATCAATTTGCATTCTTCTATATGCTAACTGCCAG
TTGTGCCAGCACTATTTGTTGAAAATACTGACTTTTTTCCACTGGATGGT
TCTATCTCCTTTGTTCTAGACTAAGTGACCATAGGCGTGTTGTTTCCCTT
CTGGGCCTTTCATTTCATTCCACTGACCTGTCTGTCTCTATTTCTACTAC
CATGCATCTTTCGCACTCCTATTGTTTCTGTTTTTTTCTTCCTCGCCTCT
TCCCGTATGGAGGATTTTCTTCTTATATTTTTTTACTTCTTTTATATATA
TATTTTTGCTATACTTTTGTTTTTATATTTGTTCTTCAACCATATCTCCC
TCACTTTTTTCTTTCTTCCACCC

TCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGCCCTGTTTCATTAT
TATGGAATAATACCGGGAGATGCCTAGCAGTCTGTTTTTGATTGTTTATT
TTTGACATCCTGATGCCTACCAAAGCTAAATGATGCTTCTATGAGGAGTA
AATGCAACCAAAGACATCAAGCAAGGCAATGAATTTTGTATTAGTAGTGT
GGACAGATTGGTGGCTGAAATACACAAGACAGGTTGGAGACACAAATGAA
GCCAGGGGGCAGTTTCTACAGCATCTGGACGATGGACAGATTATAAGACC
ATTTCTCAAGAGGCATTTCACTCTTATTTGGTACAGGGTGGAGGAGTCCA
GGATCCTCTCTAGCTTCTCACTGATTTACTCATTCACTCTGATGAATGTT
CATCATCATCTTACATCATTAGAAGGCAGTCATCCTTGGCCTTAACCAGG
ACTTAACATCAAAAATGTTTCTTCATAGTAAGAAAATATTCTACTCAGAA
CTTTAGGTATAGGCAGTAAGAATATTTTCTGATAGAGCTGAACAGTTCAC
TGAGCATGGGAGTAAACTATGTGTTATTTACTAGAACTCTTTTCTTATGT
AAAATGTTACCCTAAGTCAATAATTCACCAAGGGCAAAAGGTTATTTTCC
GGACCAGATTTGTGCCTCCCCGTTTCCCTGAAAGCAGGTTCAATTGGTGA
G

Query= MSMg01no405_p01.g1 MSMg01no405_p01.g1 CHROMAT_FILE:
MSMg01no405_p01.g1 PHD_FILE: MSMg01no405_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:05 2005
         (506 letters)



>mm_chr1_15685148_15686060
          Length = 913

 Score =  953 bits (493), Expect = 0.0
 Identities = 505/513 (98%), Gaps = 7/513 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggccctgtttcattattatggaataataccgggagatgcctagcagtctgtttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ccaggccctgtttcattattatggaataataccgggagatgcctagcagtctgtttttga 654

                                                                       
Query: 61  ttgtttatttttgacatc-------ctgatgcctaccaaagctaaatgatgcttctatga 113
           ||||||||||||||||||       |||||||||||||||||| ||||||||||||||||
Sbjct: 653 ttgtttatttttgacatcagtgactctgatgcctaccaaagctcaatgatgcttctatga 594

                                                                       
Query: 114 ggagtaaatgcaaccaaagacatcaagcaaggcaatgaattttgtattagtagtgtggac 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggagtaaatgcaaccaaagacatcaagcaaggcaatgaattttgtattagtagtgtggac 534

                                                                       
Query: 174 agattggtggctgaaatacacaagacaggttggagacacaaatgaagccagggggcagtt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agattggtggctgaaatacacaagacaggttggagacacaaatgaagccagggggcagtt 474

                                                                       
Query: 234 tctacagcatctggacgatggacagattataagaccatttctcaagaggcatttcactct 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tctacagcatctggacgatggacagattataagaccatttctcaagaggcatttcactct 414

                                                                       
Query: 294 tatttggtacagggtggaggagtccaggatcctctctagcttctcactgatttactcatt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatttggtacagggtggaggagtccaggatcctctctagcttctcactgatttactcatt 354

                                                                       
Query: 354 cactctgatgaatgttcatcatcatcttacatcattagaaggcagtcatccttggcctta 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cactctgatgaatgttcatcatcatcttacatcattagaaggcagtcatccttggcctta 294

                                                                       
Query: 414 accaggacttaacatcaaaaatgtttcttcatagtaagaaaatattctactcagaacttt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 accaggacttaacatcaaaaatgtttcttcatagtaagaaaatattctactcagaacttt 234

                                            
Query: 474 aggtataggcagtaagaatattttctgatagag 506
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aggtataggcagtaagaatattttctgatagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 913
Length adjustment: 10
Effective length of query: 496
Effective length of database: 903
Effective search space:   447888
Effective search space used:   447888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)