NCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGC
CGCGGAATTCATTCACTTTCAACTGTATGACATCAGTCAATAGCAGAATT
ATTCCATTAGTTTAAAACTAACTGTATTGGGTTAGATATATGATAGAGAA
TAGACAGATGATAAGTAATAGATAATAGATAGATATATGATATGCATATA
TGATAGTAGATAAAAGATGACAAAGATAGACATATAAATACATGAATTGT
AGATTGTATTATATATTGAGTGATACATAGATTATATAATAAGAGGATAA
CAGTAATAAATGATAATTGACTGATCGTCTTAATTATAGACAATATATCA
ATGAAGTGACAAATCTATTCCCTTACATTAAGAGGTCATCTTCTAATTAT
GGTCTCCTTTATGCCTTCATGTTGTTCTGCACACACAAACACACACACAC
CAATTCTATTTGTGCATATGAAACAAAACATGGCTGTTTTATGCTCTGAA
TCTGGCTTCTTTCATTTAGCATAATTTCCCATTCCATGTATTTTGCCGCA
CATATTATAACTTTATTCTGCTTACATATATCCTATTGCCTTATAAAATT
CTATTGCTCGTATAAAATTCCATTATTTTCTTTTTATGCCCACCCATGGA
TGGAGTTATTTTTTTCGTTTCCTTCTCTTTGCCCTTTACGGTTAGCTTCG
TGGTTGATTAACACTGGTCTTTCGCCTTTTTCACCTCTCCATTTTTTTTC
TCTCCCCCG

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAATCTTGGCAACTGTG
TAGCCTAGAGTAAACAGTGCTGGATAACAAAGAGACTCTGTCTCAAAGGT
AAAAGGTGAGGACCAACAGACAATACTGTCCTTTAATTCCTACAGACATA
CATTAGTACACACATATACATCGCACACACAGATACACACACACACACAC
ACACACACACACACACACACACACATACATACACACACATACACAAACAT
ACACACAGAGGTTTGTTTAATCTTACTAATCAAATTTATATCTTGGAAAT
ATTGAAGTCCAAAGATATATAAGGATAAAAAGATTCTATTCAGTTAGAGT
CACTCACCCTGAGACATGTTTTTGAAAATCTCTCTTCAATGAATTTAAAA
TTCACCCAGGAGCACAGACCTTAAGAGTTCATACATTCTAAAGAAACCAG
TCTTTTAAAAGGAAGTCAGGAAAGGTAATCTTTTCTTCAAAAGTAATTTC
AATGTGCAATTGTAGAAATTCTGAAAAGGTATTGATTCTTTAAACAGAGA
TAAAATTAAAGTAAAATAGGTTTTAGTTGTAATGGTAAGGAGCCAATACC
CTCTAATTAGCATGTCCTTTACAATTGACCAGAATCCCAAAATCATAATG
CATGGGAACGATAATATATCAAGCGGTTTTCATACCAATATTATTTCCTT
AACCCTCCT

Query= MSMg01no405_p03.g1 MSMg01no405_p03.g1 CHROMAT_FILE:
MSMg01no405_p03.g1 PHD_FILE: MSMg01no405_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:05 2005
         (469 letters)



>mm_chr1_125620632_125621500
          Length = 869

 Score =  795 bits (411), Expect = 0.0
 Identities = 443/469 (94%), Gaps = 24/469 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaatcttggcaactgtgtagcctagagtaaacagtgctggataacaaagagactctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaatcttggcaactgtgtagcctagagtaaacagtgctggataacaaagagactctg 260

                                                                       
Query: 61  tctcaaaggtaaaaggtgaggaccaacagacaatactgtcctttaattcctacagacata 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaaaggtaaaaggtaaggaccaacagacaatactgtcctttaattcctacagacata 320

                                                                       
Query: 121 cattagtacacacatatacatcgcacacacagatacacacacacacacacacacacacac 180
           ||||||||||||||||||||||||||||||||||                        ||
Sbjct: 321 cattagtacacacatatacatcgcacacacagat------------------------ac 356

                                                                       
Query: 181 acacacacacacacatacatacacacacatacacaaacatacacacagaggtttgtttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acacacacacacacatacatacacacacatacacaaacatacacacagaggtttgtttaa 416

                                                                       
Query: 241 tcttactaatcaaatttatatcttggaaatattgaagtccaaagatatataaggataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcttactaatcaaatttatatcttggaaatattgaagtccaaagatatataaggataaaa 476

                                                                       
Query: 301 agattctattcagttagagtcactcaccctgagacatgtttttgaaaatctctcttcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agattctattcagttagagtcactcaccctgagacatgtttttgaaaatctctcttcaat 536

                                                                       
Query: 361 gaatttaaaattcacccaggagcacagaccttaagagttcatacattctaaagaaaccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaatttaaaattcacccaggagcacagaccttaagagttcatacattctaaagaaaccag 596

                                                            
Query: 421 tcttttaaaaggaagtcaggaaaggtaatcttttcttcaaaagtaattt 469
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 597 tcttttaaaaggaagccaggaaaggtaatcttttcttcaaaagtaattt 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)