Query= MSMg01no406_a01.b1 MSMg01no406_a01.b1 CHROMAT_FILE:
MSMg01no406_a01.b1 PHD_FILE: MSMg01no406_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:10 2005
(523 letters)
>mm_chr1_117024477_117025399
Length = 923
Score = 928 bits (480), Expect = 0.0
Identities = 494/499 (98%), Gaps = 1/499 (0%)
Strand = Plus / Plus
Query: 6 gaattccatgtgtaatgcctatcctgatttccaaaatagatacttaagcatcttctgaag 65
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccatgtgtaatgggtatcctgatttccaaaatagatacttaagcatcttctgaag 265
Query: 66 gaaataagtgattcttttaaacttgtatgcaccttttttttgtctttttttgttttttgt 125
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 gaaataagtgattcttttaaacttgtatgcaccttttttt-gtctttttttgttttttgt 324
Query: 126 ttgtttgtttgtttttaagtggtttccattacccaggtataaaaagattctgaaactata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtttgtttgtttttaagtggtttccattacccaggtataaaaagattctgaaactata 384
Query: 186 atatagtacaatacagggttttgggtttcttttgtaattgattaagttttttatatactt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatagtacaatacagggttttgggtttcttttgtaattgattaagttttttatatactt 444
Query: 246 tacaccacaattcctgttctctttccttcctctcctcccagtcccccccacccccaccac 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 tacaccacaattcctgttctctttccttcctctcctcccagtcccccccacccccacccc 504
Query: 306 atcaactccactcaagccccatccacctctcctgttcttctcagaaaatgggaggtctcc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcaactccactcaagccccatccacctctcctgttcttctcagaaaatgggaggtctcc 564
Query: 366 catggataccaggtagttttggcataacatatttcaataagactaggaacatcttcctct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catggataccaggtagttttggcataacatatttcaataagactaggaacatcttcctct 624
Query: 426 gagatggcttcactttctccctccctcccttcccccgngccccccacccgtgtgtgtgtg 485
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 gagatggcttcactttctccctccctcccttcccccgtgccccccacccgtgtgtgtgtg 684
Query: 486 tgtgtgtgtgtgtgtgtgt 504
|||||||||||||||||||
Sbjct: 685 tgtgtgtgtgtgtgtgtgt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_a01.g1 MSMg01no406_a01.g1 CHROMAT_FILE:
MSMg01no406_a01.g1 PHD_FILE: MSMg01no406_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:10 2005
(420 letters)
>mm_chr1_117145249_117146068
Length = 820
Score = 787 bits (407), Expect = 0.0
Identities = 416/419 (99%)
Strand = Plus / Minus
Query: 1 tccactgttggtgacaggcttcaaggagatgcctgtgtaaggcaccaccttccttttcat 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 tccactgttggtgacaggcttcaaggagatgcctgggtaaggcaccaccttccttttcat 560
Query: 61 tttctcaaaatgtacaaatttctatcctttctaactgtgatatttcttgcttaaatcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttctcaaaatgtacaaatttctatcctttctaactgtgatatttcttgcttaaatcaac 500
Query: 121 taatatttttacatttgtatcataaaatccaaaaatgtaggtttatattctcatattctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taatatttttacatttgtatcataaaatccaaaaatgtaggtttatattctcatattctc 440
Query: 181 cttggctatgcttgctcctcaaacttacattgttatcttatggatgtgtgaagaagaact 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 439 cttggctatgcttgctcctcaaacttacattgttatcttatggctgtgtgaagaagaact 380
Query: 241 gtcatttaatatatagtttaataggtcaaaagatgaagattaaaagaaaaagtgagctgc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtcatttaacatatagtttaataggtcaaaagatgaagattaaaagaaaaagtgagctgc 320
Query: 301 tccaaaaaccaaaaaacaaccaaacaaaaacagaattattttctataagcatctctctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tccaaaaaccaaaaaacaaccaaacaaaaacagaattattttctataagcatctctctcc 260
Query: 361 tgtttgcttatttctaacagttattcctggcttccatttttgaggaggctgccctcttc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtttgcttatttctaacagttattcctggcttccatttttgaggaggctgccctcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
