This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-406B08
Chromosome
1 (Build37)
Map Location
123,288,587 - 123,288,831
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Marco
,
En1
,
AI848258
,
Insig2
Downstream gene
Ccdc93
,
LOC100041926
,
Htr5b
,
LOC666656
,
Ddx18
,
LOC666971
Link
Open Mouse BAC browser
Click to get alignment info.
name
Marco
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17167
MGI:1309998
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
En1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13798
MGI:95389
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
AI848258
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:98452
MGI:2138347
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs
name
Insig2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:72999
MGI:1920249
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Ccdc93
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70829
MGI:1918079
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs
name
LOC100041926
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041926
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
name
Htr5b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15564
MGI:96284
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666656
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666656
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
Ddx18
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:66942
MGI:1914192
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666971
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666971
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins
pseudo
: _no_value
name
Marco
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130131
GeneID:17167
MGI:1309998
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: macrophage receptor with collagenous structure
transcript_id
: NM_010766.2
name
En1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:7106304
GeneID:13798
MGI:95389
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: engrailed 1
transcript_id
: NM_010133.1
name
AI848258
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94363928
GeneID:98452
MGI:2138347
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs
product
: expressed sequence AI848258
transcript_id
: XM_895892.2
name
Insig2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:19526953
GeneID:72999
MGI:1920249
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: insulin induced gene 2
transcript_id
: NM_133748.1
name
Insig2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31342571
GeneID:72999
MGI:1920249
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: insulin induced gene 2
transcript_id
: NM_178082.2
name
Ccdc93
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:68448541
GeneID:70829
MGI:1918079
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 93
transcript_id
: NM_001025156.1
name
Ccdc93
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142352460
GeneID:70829
MGI:1918079
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 93
transcript_id
: NM_027567.2
name
Ccdc93
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142371535
GeneID:70829
MGI:1918079
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 93
transcript_id
: NM_029955.2
name
LOC100041926
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149234241
GeneID:100041926
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
product
: similar to low molecular mass ubiquinone-binding protein
transcript_id
: XM_001477223.1
name
Htr5b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:24475921
GeneID:15564
MGI:96284
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: 5-hydroxytryptamine (serotonin) receptor 5B
transcript_id
: NM_010483.2
name
Ddx18
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31981162
GeneID:66942
MGI:1914192
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
transcript_id
: NM_025860.2
name
Marco
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754640
CCDS:CCDS15234.1
GeneID:17167
MGI:1309998
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA]
GO_process
: GO:0006817 - phosphate transport [Evidence IEA]
codon_start
: 1
product
: macrophage receptor with collagenous structure
protein_id
: NP_034896.1
name
En1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7106305
CCDS:CCDS15235.1
GeneID:13798
MGI:95389
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0030902 - hindbrain development [Evidence IGI]; GO:0030901 - midbrain development [Evidence IGI]; GO:0030917 - midbrain-hindbrain boundary development [Evidence IMP]; GO:0048666 - neuron development [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IGI]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]
citation
: [PUBMED 1363401]
codon_start
: 1
exception
: mismatches in translation
function
: transcription factor
note
: engrailed-1
product
: engrailed 1
protein_id
: NP_034263.1
name
AI848258
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94363929
GeneID:98452
MGI:2138347
definition
codon_start
: 1
product
: hypothetical protein LOC98452
protein_id
: XP_900985.2
name
Insig2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19526954
CCDS:CCDS15236.1
GeneID:72999
MGI:1920249
definition
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0006991 - response to sterol depletion [Evidence IDA]
codon_start
: 1
product
: INSIG-2 membrane protein
protein_id
: NP_598509.1
name
Insig2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30017389
CCDS:CCDS15236.1
GeneID:72999
MGI:1920249
definition
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0006991 - response to sterol depletion [Evidence IDA]
codon_start
: 1
product
: INSIG-2 membrane protein
protein_id
: NP_835183.1
name
Ccdc93
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:68448542
CCDS:CCDS15237.1
GeneID:70829
MGI:1918079
definition
codon_start
: 1
note
: isoform a is encoded by transcript variant 1
product
: coiled-coil domain containing 93 isoform a
protein_id
: NP_001020327.1
name
Ccdc93
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21539631
GeneID:70829
MGI:1918079
definition
codon_start
: 1
exception
: mismatches in translation
note
: isoform b is encoded by transcript variant 2
product
: coiled-coil domain containing 93 isoform b
protein_id
: NP_081843.1
name
Ccdc93
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21539651
CCDS:CCDS15238.1
GeneID:70829
MGI:1918079
definition
codon_start
: 1
exception
: mismatches in translation
note
: isoform c is encoded by transcript variant 3
product
: coiled-coil domain containing 93 isoform c
protein_id
: NP_084231.1
name
LOC100041926
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149234242
GeneID:100041926
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001477273.1
name
Htr5b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754260
CCDS:CCDS15239.1
GeneID:15564
MGI:96284
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: 5-hydroxytryptamine (serotonin) receptor 5B
protein_id
: NP_034613.1
name
Ddx18
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31981163
CCDS:CCDS15240.1
GeneID:66942
MGI:1914192
definition
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
codon_start
: 1
product
: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
protein_id
: NP_080136.2
name
LOC666656
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666656
definition
number
: 1
pseudo
: _no_value
name
LOC666971
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666971
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:124530
definition
standard_name
: 44.MMHAP24FRG11.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:158845
definition
standard_name
: U18424
name
(CDS detail)
type
STS
link
xref
UniSTS:178454
definition
standard_name
: AI323439
name
(CDS detail)
type
STS
link
xref
UniSTS:128752
definition
standard_name
: D1Mit391
name
(CDS detail)
type
STS
link
xref
UniSTS:128568
definition
standard_name
: D1Mit226
name
(CDS detail)
type
STS
link
xref
UniSTS:128630
definition
standard_name
: D1Mit28
name
(CDS detail)
type
STS
link
xref
UniSTS:116257
definition
standard_name
: D1Mit217
name
(CDS detail)
type
STS
link
xref
UniSTS:272950
definition
standard_name
: PMC314463P1
name
(CDS detail)
type
STS
link
xref
UniSTS:98355
definition
standard_name
: RH104030
name
(CDS detail)
type
STS
link
xref
UniSTS:142987
definition
standard_name
: En1
name
(CDS detail)
type
STS
link
xref
UniSTS:128783
definition
standard_name
: D1Mit419
name
(CDS detail)
type
STS
link
xref
UniSTS:128785
definition
standard_name
: D1Mit420
name
(CDS detail)
type
STS
link
xref
UniSTS:142247
definition
standard_name
: D1Mit470
name
(CDS detail)
type
STS
link
xref
UniSTS:178456
definition
standard_name
: AI848258
name
(CDS detail)
type
STS
link
xref
UniSTS:128751
definition
standard_name
: D1Mit390
name
(CDS detail)
type
STS
link
xref
UniSTS:272505
definition
standard_name
: PMC303355P2
name
(CDS detail)
type
STS
link
xref
UniSTS:113660
definition
standard_name
: AU027072
name
(CDS detail)
type
STS
link
xref
UniSTS:167280
definition
standard_name
: AU022885
name
(CDS detail)
type
STS
link
xref
UniSTS:234201
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:158843
definition
standard_name
: AA959903
name
(CDS detail)
type
STS
link
xref
UniSTS:143429
definition
standard_name
: Htr5b
name
(CDS detail)
type
STS
link
xref
UniSTS:178452
definition
standard_name
: X69867
name
(CDS detail)
type
STS
link
xref
UniSTS:235514
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:123980
definition
standard_name
: 32.MMHAP32FLC5.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:333685
definition
standard_name
: REN8885
name
(CDS detail)
type
STS
link
xref
UniSTS:158841
definition
standard_name
: 38.MMHAP85FLE5.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:158842
definition
standard_name
: C76132
name
(CDS detail)
type
STS
link
xref
UniSTS:128701
definition
standard_name
: D1Mit343
name
(CDS detail)
type
STS
link
xref
UniSTS:128700
definition
standard_name
: D1Mit342
name
(CDS detail)
type
STS
link
xref
UniSTS:128838
definition
standard_name
: D1Mit471
name
(CDS detail)
type
STS
link
xref
UniSTS:125387
definition
standard_name
: MHAa84f0.seq
clone name
MSMg01-347N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131O12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-513P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-205C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-179N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-054K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-062L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-166M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-498B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-293H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-315P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290N04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329I24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436I18
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